Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272510g00004 ATGAGAGCAATCNNNNNNNNNNGTGGTTTAGGTTCTGTTTTCAGAGGCCAGCTTTCAGATGGAACTCTCATTGCTGTTAAAGTTTTCAATTTGGAGTCACAACAAGCACCAAGGAGCTTTGATGCAGAATGTGAAGCAATGCGCAATCTTCGACATAGAAATCTTGTTAAAGTCATCACCAGTTGCTCAAATTCCATTGACTTCAAGGCCTTGGTGATGGAATTTGTTCCAAATGGGAACTTGGAGAAGTGGTTGTATTCTCATAATTATTTTGTACCTTTCATGGAAAGGCTGAAGATAGTGATAGATGTTGCATGTGCATTGGAGTATCTGCACCATGGTAACACTAGAACTGTGGTGCATTGTGACTTGAAGCCAAGTAATGTTCTGTTGGATGAAGATATGGTTGCACATGTTTGTGATTTCAACATTGCTAAACTCTTGGAAGAAGGTCAATCTGAAATTCATACAAACACCTTAGCAACACTTGGTTATATTGCTCCAGAATATGGCTCAAAAGGAATTGTTTCCATTAAGGGAGATGTGTACAGCTATGGTATTATGGTGATGGAAGTGTTCACAAGAAAGAAACCAACTGATGAAATGTTTTCTGAGAGAGTAAGCTTAAGGTCATGGATCCTAGAGTCATTGCAAGGTGGGATAACTGAGGTTGTGGATCCTAATCTGATGGAGGGTGAGGAACAAGTTACTTCTGCCATGGAATTAGCGCTATCAAATATCATGGAGCTGGCTCTGAATTGTACAGAGGAATCTCCAAATGAAAGAATAAGCATGAAGGAAGCATTTGATCGGCTAAACAAAATCAAGACCACATTTGTGAAGATGACACAAGGAAATAATTGA 864 0.39 MRAIXXXXGLGSVFRGQLSDGTLIAVKVFNLESQQAPRSFDAECEAMRNLRHRNLVKVITSCSNSIDFKALVMEFVPNGNLEKWLYSHNYFVPFMERLKIVIDVACALEYLHHGNTRTVVHCDLKPSNVLLDEDMVAHVCDFNIAKLLEEGQSEIHTNTLATLGYIAPEYGSKGIVSIKGDVYSYGIMVMEVFTRKKPTDEMFSERVSLRSWILESLQGGITEVVDPNLMEGEEQVTSAMELALSNIMELALNCTEESPNERISMKEAFDRLNKIKTTFVKMTQGNN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272510g00004 287 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 9 279 - -
Stsc272510g00004 287 Gene3D Phosphorylase Kinase; domain 1 2 75 - -
Stsc272510g00004 287 SMART serkin_6 9 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272510g00004 287 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 76 285 - -
Stsc272510g00004 287 ProSiteProfiles Protein kinase domain profile. 1 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272510g00004 287 Pfam Protein kinase domain 10 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272510g00004 287 Gene3D Transferase(Phosphotransferase) domain 1 76 286 - -
Stsc272510g00004 287 SUPERFAMILY Protein kinase-like (PK-like) 10 278 IPR011009 -
Stsc272510g00004 287 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Stsc272510g00004 287 PIRSF ILK 12 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272510g00004 Stsc-Chr272510 18884 19842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272510g00004 10 281 Receptor kinase-like Gene Family AT3G47090 41.438 1.63e-69 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc272510g00004 Pkinase 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272510g00004 - K13420 qsa:O6P43_031956 381.333