Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272505g00006 ATGATAGAATGGCGTGCACTCTTCCTTGTGTGCGCACCTGAACCTGACTCAGCGGTGAAAGCGCCAAAGCTTCATCACCCTCCAACTCTTCTTCTTCTTCTTCTTCATTCCAAATACCCTAATTTCCTCAGCACCACTGCTACTTCACTCTCTCCTCTCACCCGAACTCCAAAGGTATTGTGTGGTCTGTGGATAATGGGAAGTACTGGTACTGACAAGATGCCAGGCAATAAAAGCACAGGAAGCTCAGAAGCCACTATTGAGATAAAGATCAAAACCTTGGATTCACAGACCTACACTCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACAAATTGCTTCTGTGACTGGAGTGTTATCAGATCGGCAGCGCTTAATTTGTCAAGGGAAGGTTCTGAAGGATGATCAACTCCTATCTGCATACCATGTTGAAGATGGTCATACCTTGCATCTGGTTTCTAGACAACCTGATCTATCAGGAAGTTTGCCCAATCATTCAGGGGCTGACCCAAATTCAAGCACAAGTCATGGTCATAGTAGTCAAATATCCCCTGGTGTATTCATTGAAACTTTCAATGTGCCTGTTCAGGGAGATGGGGTTACTCCTGAATTCAGTAGAATTGTTTCTGCTGTACTAGGATCTATTGGAATTCCAAGTTTCGGAAGTGGTGTTGAAGGGATTGATGTCAGGGAGCATGATTCCCAAGGCTTTGGAAGAACTTCAGGTACCAGTGGTCTGTCAGATTCGTCTCATCCTCATCCTGAACAAGCTGGCTTGAGGTCTTCATCAGATAGGTTGCGTAATCCCTTTGTACATCCAGCAGCAGCTTCTCTGGGTTCTTTGCAGCCTCCTGTTATTCCCGATTCTTTGACGACACTATCCCAATTTCTGAGTCATATAAGTCATGAATTTGATGCAATTGTCAGAGAAGGGGGCAATAATGTCCCAGCAGCTGATGCTCATAGGAATGAAGATGTGGGGTCTGCTTCTTCACGATTGGGTTCAACACCAGAAGCACTTTCATCACCTGCATCCTTGGCAGAAATCATGCTCTCTTCCAGACGAATGATGATTGAACAAGCTGGGGAGTGCCTACTTCAACTTGCAAGGCAGCTGGAGAATCAGGCAAATGTAACTGATCCTTTGGTGCGATCAAGCGTCCAGTCTAGGGCTTTGAGGGCTGGAGTTCTGTTCTATAACCTAGGTGCATTATTCCTTGAGCTTGGTCGCACAACCATGACACTGCGTTTGGGTCAAAGTCCGTCTGAAGCTGTAGTTAATGGCGGGCCTGCAGTTTTTGTATCTCCATCTGGTCCTAACCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGCGCGAACTTTGGTACTGTCCCCATAGGACATGCTCAGTCTAATGCAAGTTTAGGTAGTGGACTTGGTTCAAGTTTTTTCCCACGGCGGATTGATATACAGATACGACGAGGGGTCTCAACAGCCACACCAAATGCCAGTCAAGAAGAACGTGCTGATACACAGTCTGCTTCAGTACAAAGAAATCAAGGTGAAGGTCCTGCTAATCAGGCAAACTCAAGGCGTCCAGATGTGGCTGGTGCTGGGGAGCAAGGAGTAAGGATTTTGCCAATTAGAACCATGGTTGCAACAGTACCAGGTTCCTTAGGTCGTCCACCTTCAGAACCATCTGGTAATTCTATAGGGGTTTACTATCCGGTTCTCGGAAGATTTCAACAGGTATCTTCAGGGCATGGAAATAGTGAACAGGGATCCCAACCACCTAGTCAGCATCATGCTGTGCAACAGTCAAGTCGTGAAGACACGTTGCGAAGGCAAAGATCCTCATCAACTCCTACCACAAGCTCGAATTCCCGTGTGGTGAATATCAATATCCTATCAGCTGGTGGAGCCCAGAATAATCAGGAATCTGAGCGACAGATACCAAACAGTGTTCTTCAGTTTATAAGGACACTGTTTCCTGGGGGAGAAATTCATGTTGAAGACTTGAATTTAGAGGGAACAAATTCAGGTTCTACCTCAGAGCAGGCTGCAACAGCAAGGGCAGCTCAGGCCCCTGAAGCTGAACCTAGAGTTAGTGATGAAGGAATATTTTTGTCTAATATACTCCGCGAAATCATACCCATTGTATCTCAACAAACAGACTCTGGAAGAAATCCTTCAGAGGAACAAGCAGCTCAGGGTTCTTCATCACAGGTGGAAACCGATGCAGGGACATCACGGAGGCGGAATGGTTCAGATCCAAGCCCCCCTGATTCTAAACGCCAAAAGATGGAGTGA 2304 0.4635 MIEWRALFLVCAPEPDSAVKAPKLHHPPTLLLLLLHSKYPNFLSTTATSLSPLTRTPKVLCGLWIMGSTGTDKMPGNKSTGSSEATIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSDRQRLICQGKVLKDDQLLSAYHVEDGHTLHLVSRQPDLSGSLPNHSGADPNSSTSHGHSSQISPGVFIETFNVPVQGDGVTPEFSRIVSAVLGSIGIPSFGSGVEGIDVREHDSQGFGRTSGTSGLSDSSHPHPEQAGLRSSSDRLRNPFVHPAAASLGSLQPPVIPDSLTTLSQFLSHISHEFDAIVREGGNNVPAADAHRNEDVGSASSRLGSTPEALSSPASLAEIMLSSRRMMIEQAGECLLQLARQLENQANVTDPLVRSSVQSRALRAGVLFYNLGALFLELGRTTMTLRLGQSPSEAVVNGGPAVFVSPSGPNHIMVQPLPFQPGANFGTVPIGHAQSNASLGSGLGSSFFPRRIDIQIRRGVSTATPNASQEERADTQSASVQRNQGEGPANQANSRRPDVAGAGEQGVRILPIRTMVATVPGSLGRPPSEPSGNSIGVYYPVLGRFQQVSSGHGNSEQGSQPPSQHHAVQQSSREDTLRRQRSSSTPTTSSNSRVVNINILSAGGAQNNQESERQIPNSVLQFIRTLFPGGEIHVEDLNLEGTNSGSTSEQAATARAAQAPEAEPRVSDEGIFLSNILREIIPIVSQQTDSGRNPSEEQAAQGSSSQVETDAGTSRRRNGSDPSPPDSKRQKME 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272505g00006 767 MobiDBLite consensus disorder prediction 582 629 - -
Stsc272505g00006 767 Gene3D - 80 175 - -
Stsc272505g00006 767 MobiDBLite consensus disorder prediction 719 754 - -
Stsc272505g00006 767 SMART ubq_7 87 158 IPR000626 GO:0005515
Stsc272505g00006 767 MobiDBLite consensus disorder prediction 158 185 - -
Stsc272505g00006 767 FunFam Large proline-rich protein BAG6 79 172 - -
Stsc272505g00006 767 MobiDBLite consensus disorder prediction 615 629 - -
Stsc272505g00006 767 Pfam Ubiquitin family 89 159 IPR000626 GO:0005515
Stsc272505g00006 767 ProSiteProfiles Ubiquitin domain profile. 87 162 IPR000626 GO:0005515
Stsc272505g00006 767 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 74 763 - -
Stsc272505g00006 767 MobiDBLite consensus disorder prediction 494 540 - -
Stsc272505g00006 767 MobiDBLite consensus disorder prediction 494 525 - -
Stsc272505g00006 767 MobiDBLite consensus disorder prediction 719 767 - -
Stsc272505g00006 767 PRINTS Ubiquitin signature 118 138 IPR019956 -
Stsc272505g00006 767 PRINTS Ubiquitin signature 97 117 IPR019956 -
Stsc272505g00006 767 PRINTS Ubiquitin signature 139 160 IPR019956 -
Stsc272505g00006 767 MobiDBLite consensus disorder prediction 236 270 - -
Stsc272505g00006 767 SUPERFAMILY Ubiquitin-like 82 160 IPR029071 -
Stsc272505g00006 767 MobiDBLite consensus disorder prediction 582 604 - -
Stsc272505g00006 767 MobiDBLite consensus disorder prediction 240 267 - -
Stsc272505g00006 767 MobiDBLite consensus disorder prediction 319 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272505g00006 Stsc-Chr272505 19907 27490 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272505g00006 87 158 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 4.98e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272505g00006 K23390 - gmx:100783070 983.786