Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272505g00003 ATGACTGCAGCAGCCACCATGTGTGTTGAAGAAGGTGAGCAAGTTGAGCATCATGATCATCAAGATGTGGAGATAAAGAAGGAGGACCTGATTCATAACACAAGAAGGTGGCCTTTGCATTGTGATCATCTCTTGATGGACAACACACAAACACCATCTTCCTTTACATCTTCCACTGCTAATTCACTCCCTCTGGAAAGCATATGTGAGGAGACAGTGATTGCAGACAAGAAACAGAACCTGACAAGCTATGTCCCCACTCTCCGGTCCGGAGAGTGGTCTGATATTGGAGGCCGGCCTTACATGGAGGATACACACATATGCATTGGAGACTTGGCAAAAAGATTTGGATATAACAACAACCTACTCTCTCAGGAAGCTGTTTCATTCTATGGTGTATTTGATGGACATGGAGGGAAGAGCGCGGCTCAATTCGTGCGAGATCATCTGCCAAGGGTCATTGTTGAGGATGCTGACTTCCCTTTGGAACTTGAGAAGGTTGTAACAAAGTCTTTCTTGGATACTGATGCTGAGCTTAAAGCATACTCTCTTGAATCTTCCTTATCTTCTGGAACTACTGCACTCACTGCAATTATATTCGGAAGGTCATTGCTTGTAGCCAATGCAGGAGACTGCAGGGCTGTGTTGTCGCGCCACGGGGCAGCAATAGAGATGTCCAAGGATCATAGACCATACTGCATTAAAGAAAGAAAGCGCATAGAGTCCCTAGGTGGATTCATTGATGATGGCTACCTGAATGGCCAGTTAGGTGTCACTCGTGCTCTAGGCGACTGGCATCTTGAAGGAATGAAGGAAACAGGTGGTGGTGGTGGTGGCGGAGGTGGAGGTGGACCATTGAGTGCGGAGCCTGAACTCAAATTGATGACATTGAGCAAAGAAGACGAATTCTTGATCATAGCAAGTGATGGAATTTGGGATGTTTTTCGTAGCCAAAACGCAGTGGATTTTGCTAGGAGGAGGCTTCAAGAACACAATGATGTGAAGCAATGCTGCAAGCAAATAGTAGAGGAAGCAATAAAGAGAGGAGCAACAGATAACTTAACAGTTGTGATGGTATGTTTTCAGTCAGATCCACCACCACCTGTGGTTGTGGAAAGAGCAAGAGTTAGAAGAAGCATATCTGCTGAGGGACTGCAGAACCTTAAATGCCTACTCCAAGGTTAA 1185 0.4565 MTAAATMCVEEGEQVEHHDHQDVEIKKEDLIHNTRRWPLHCDHLLMDNTQTPSSFTSSTANSLPLESICEETVIADKKQNLTSYVPTLRSGEWSDIGGRPYMEDTHICIGDLAKRFGYNNNLLSQEAVSFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTKSFLDTDAELKAYSLESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRHGAAIEMSKDHRPYCIKERKRIESLGGFIDDGYLNGQLGVTRALGDWHLEGMKETGGGGGGGGGGGPLSAEPELKLMTLSKEDEFLIIASDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKQIVEEAIKRGATDNLTVVMVCFQSDPPPPVVVERARVRRSISAEGLQNLKCLLQG 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272505g00003 394 CDD PP2Cc 89 361 IPR001932 -
Stsc272505g00003 394 Pfam Protein phosphatase 2C 101 353 IPR001932 -
Stsc272505g00003 394 Gene3D - 70 364 IPR036457 -
Stsc272505g00003 394 ProSiteProfiles PPM-type phosphatase domain profile. 89 361 IPR001932 -
Stsc272505g00003 394 FunFam Probable protein phosphatase 2C 22 72 364 - -
Stsc272505g00003 394 SUPERFAMILY PP2C-like 80 362 IPR036457 -
Stsc272505g00003 394 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Stsc272505g00003 394 SMART PP2C_4 79 359 IPR001932 -
Stsc272505g00003 394 PANTHER PROTEIN PHOSPHATASE 2C 76 359 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272505g00003 Stsc-Chr272505 10992 13209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272505g00003 78 394 PP2C-type Phosphatase Gene Family AT2G25620 60.312 5.75e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Stsc272505g00003 PP2C 1.2e-68 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272505g00003 K14803 - gmx:100782648 552.362