Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272505g00001 ATGGGTTCCGGCACCAGTAGACTAGGGTCTTCTCGCCCTCCCACGCCCACTCTCAACCGCAACAACACGCGCTTCAAGCTCTCCTCTCTTCTCTGCGGTGCTTCCACCTCTCGCTCCACCTATCAGATGGAAGAACATCCATCTGAACTTCAGGCAGATTCAGCAACAGAACTTGATGGAGGAACTCAAGAAATCACCGAGGAATCATCGATATCCTGTACAGAAGCTACGGTCGGCTGCAGCTGCCATGCTGAAGCCTCTACCTCATCCGATACAAGAAATGAGTCTCATCAGCATACTGGTTTCGAAGGTTATTCCATAAATGTCGCAGCAAGTAGTCAGAGAAAATGCTTGTCTGAATGTAAGGAGCTAGTCCCTCCTTATCAGGTAAGTGCTCGTCATAGTGGTAATGAATCATATAGGGATAGCAGCAACACAGCTAGTACTTCTTTTGTAGAGCAAGAATCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGGAGTCAATAATGTTGATGATCCAGTGGTTAGTGGTGTATCTCAAATCTCTCATGAGACAGTGCGTCCAAGGAGTTCAAGCCCTGAGGACACTGCTGATGCCAGTGAGCATGATACCGGAAGGAGTGGTAGAAGATTATTTTGGGATGCTTTTTCTCGGCGTAGTTCTAGAAGGCTTGGCGACTCTCAAACAATTGTCTTCTCTGCTGGCAGTGCTGATGATCCTGGATCTCAAGATAGATGGCTTGTTGATCTTGGTGGGGATTTCTCAAATGATGGGTTTGGAGGTGCTTCTTCTGGATATGTGGGCAGTAGAATTCACAGATTTAACGAAAGAATGCGGCACTCAAGATCTGAGATCTGGGAAAGGCTTCGAGGCGGCCTTGATGATTTTGGTCGTTTGAATTCTTCCTGTCCATCAGGACTTCATGCAGATGGTATGTGCTCATGTGAGTCTTTACCAACAGCTGAAGAATCTAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAAGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAGCCTGTATCGCTTTCCCTATCCATGGTTTCTCTCCCTGCTCCTGAATCAGTTGTCGACTCTTTCCCTCTCAAGTCTCACAAAAAGGTTGATGCAGCTGATGGTGGCAATGATGCTGAACAATGTTACATATGTTTGGCGGAGTATGAAGAAGGGGACCAAATTCGAGTTCTTCCTTGCAACCATGAGTATCACATGTCTTGCGTTGATAAGTGGCTTAAAGAAATACATGGGTATGGTCATTACAACCAAAAAACTCATCATTCTTCCTCATTCGTTTTGTAA 1344 0.4554 MGSGTSRLGSSRPPTPTLNRNNTRFKLSSLLCGASTSRSTYQMEEHPSELQADSATELDGGTQEITEESSISCTEATVGCSCHAEASTSSDTRNESHQHTGFEGYSINVAASSQRKCLSECKELVPPYQVSARHSGNESYRDSSNTASTSFVEQESSDPVSVNVSANKDGVNNVDDPVVSGVSQISHETVRPRSSSPEDTADASEHDTGRSGRRLFWDAFSRRSSRRLGDSQTIVFSAGSADDPGSQDRWLVDLGGDFSNDGFGGASSGYVGSRIHRFNERMRHSRSEIWERLRGGLDDFGRLNSSCPSGLHADGMCSCESLPTAEESSTRASISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPLKSHKKVDAADGGNDAEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGYGHYNQKTHHSSSFVL 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272505g00001 447 MobiDBLite consensus disorder prediction 36 70 - -
Stsc272505g00001 447 Pfam RING-like zinc finger 394 422 IPR001841 -
Stsc272505g00001 447 SUPERFAMILY RING/U-box 382 428 - -
Stsc272505g00001 447 MobiDBLite consensus disorder prediction 132 170 - -
Stsc272505g00001 447 MobiDBLite consensus disorder prediction 192 209 - -
Stsc272505g00001 447 MobiDBLite consensus disorder prediction 1 23 - -
Stsc272505g00001 447 MobiDBLite consensus disorder prediction 177 191 - -
Stsc272505g00001 447 ProSiteProfiles Zinc finger RING-type profile. 395 425 IPR001841 -
Stsc272505g00001 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 438 IPR013083 -
Stsc272505g00001 447 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 198 431 - -
Stsc272505g00001 447 MobiDBLite consensus disorder prediction 129 209 - -
Stsc272505g00001 447 FunFam Putative RING zinc finger domain superfamily protein 362 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272505g00001 Stsc-Chr272505 51 2647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272505g00001 309 430 C3H Transcription Factor Family AT5G45290 54.074 2.91e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272505g00001 - - pcin:129320229 456.832