Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272503g00003 ATGATGATCATTATTAAGAACCGTTTGTTCATATTCATGTCCACATTCATCATGATTCTTTCTCTCCTTTTCAGTGTTGTTCATGCCCAAAACAACGACGACGATGAAGTCATGGCACCTGACATGTCTGGTGATACAATGCATCCAAGCAAAGCTCTTGTTATATCTGTCCTCATAGTAATGTTCACCATAACATGCCTCTTACTCGCATATGTTCGTTTCTGCAAGCTTCATGCCGTTGGGATTTCAAATCTGAACCCCAACGGCGTCTCGGGTCATATCTTGACCCGAAACGGGTCAAGATTCTCGGGAATCAACAGGGAAATCATCGAAAAACTTCCGTTCTTTCGATTTTCTTCCCTCAAGGGCTCCAAAGAAGGTCTAGAATGTACCGTTTGTCTCTCGAGATTCGAGGATTCCGAGGTTCTGAGGTTACTCCCAAAGTGTCAGCATGCTTTTCACATTACTTGTATTGACAAGTGGCTCGAAAGCCACTCCACGTGTCCTCTTTGTAGGTACAGGGTGGAACCCGGAGATATCAAGAGTCACACATACTCTGTTAGCTCCGGGTCCCTCCGAGTACCTTCAAACTTAACGGAAGAACCAAATCTCGAGATCTACGTCCAAAGGGAACCGTCCCGTCGACCGTCATCGAGATTCAGCATCGGAACCGGGTTCTTGGAATTCAACAAAAGCAAGAAACAAGAACAAGAAGCTAGTAGCAGTAGTAATAATAGTAATAGTAACAAGGATATGAATAAGAATAACCACAAGTTGAACCACAGAATAGTGATATCTGATGTTGTAACGAGAAGTAGGTGGAGCGATCTAAACTCTTCGGATTTGCTATCGCTGAGCATGGAGATGCTGAGCGATGCTTCCAGCGCGAGATTCTCGGCGGAGAAGATTGTTCATCGTCAAGGGGATTATTCAGTTAGCGTTGATGATGATGAAGAAGAAGAGAATTCATTCACAGCACTGAATATTGGTAAGAATAAGGATTGTTGTGGGGAGAAGAGGTCAATGTCTGAGATTGCAAATGTTCCAAGGTTTGCAGGGACCATGACGATGAGAAAGCAGAACAGTAATAGTGGTGGTGTTGTTGGAAGGGAAGAAGAAGAGAGGTTCTTGAGGATTTGGATGCCAATTGCTCGTAGAACGGTTCAGTGGTTTGCTAGAAGACAAAGAAACGATGATGATGATGATGGTGATGAATTAAATACATACAAGCGTTTTGGATCAAATGTTTGA 1251 0.4333 MMIIIKNRLFIFMSTFIMILSLLFSVVHAQNNDDDEVMAPDMSGDTMHPSKALVISVLIVMFTITCLLLAYVRFCKLHAVGISNLNPNGVSGHILTRNGSRFSGINREIIEKLPFFRFSSLKGSKEGLECTVCLSRFEDSEVLRLLPKCQHAFHITCIDKWLESHSTCPLCRYRVEPGDIKSHTYSVSSGSLRVPSNLTEEPNLEIYVQREPSRRPSSRFSIGTGFLEFNKSKKQEQEASSSSNNSNSNKDMNKNNHKLNHRIVISDVVTRSRWSDLNSSDLLSLSMEMLSDASSARFSAEKIVHRQGDYSVSVDDDEEEENSFTALNIGKNKDCCGEKRSMSEIANVPRFAGTMTMRKQNSNSGGVVGREEEERFLRIWMPIARRTVQWFARRQRNDDDDDGDELNTYKRFGSNV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272503g00003 416 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Stsc272503g00003 416 FunFam RING-H2 finger protein ATL43 105 179 - -
Stsc272503g00003 416 Pfam Ring finger domain 129 172 IPR001841 -
Stsc272503g00003 416 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 396 - -
Stsc272503g00003 416 MobiDBLite consensus disorder prediction 231 253 - -
Stsc272503g00003 416 MobiDBLite consensus disorder prediction 231 259 - -
Stsc272503g00003 416 CDD RING-H2_EL5-like 129 172 - -
Stsc272503g00003 416 SUPERFAMILY RING/U-box 109 176 - -
Stsc272503g00003 416 SMART ring_2 130 171 IPR001841 -
Stsc272503g00003 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 179 IPR013083 -
Stsc272503g00003 416 MobiDBLite consensus disorder prediction 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272503g00003 Stsc-Chr272503 13274 14524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272503g00003 43 399 C3H Transcription Factor Family AT2G20030 43.243 1.78e-79 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272503g00003 K10664 - gmx:100803881 308.531