Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272500g00003 ATGTCCGCCCCTAATCCCTACCTACACGTGCTCACCAATCACCATCTGTTGTTCTCTCAGTCCCGCAATATCTCAAAGCCTCATACTCCTCCTGGGGTTTCTTTTCTTTCTTCTCACTTTCTGCTGCTTCAACAACTTTCTGTGACCCCAAACCGTTGCAACATTAGACAACACCTTCGAGGGATGGAGGCTCTTGGTACCGTGGATGACCTCTTGGATTTCTCATCAGACATAGGTGAGGATGACGATGATGTTGTTGACAGAACTAGAAAAAGCATTCCTAGTAACGCAGAATGCAAGCTACCTTCATTCGACCCATTGGGCCAGGATGATCCTAACCATTCATTCTCTGAGTTTGCCGATGAAGAGCTTGAATGGTTGTCCAATAAAGACGCATTTCCTGCTGTCGAAACATTTGTTGACATATCATCTATTCAGCCTAACCTATCAAAGCAACAAGGGACAGCCAACGGCAACAGTAATAACAGCACTAACAACATTACACTCTTAAACGGCTTTGATCACCTGAAGGTCCCCGTCCGTGCACGGAGCAAGTGTCGTAGTAGGCCTCGCTCAACTACCGCCGACATCTCAAGTCGTCAGTCCTGGTGGAAACTACCTAGTAGCCAAATTTCAAGAGCAGAAGTGTTAAAAATCCCAACCATTGGGAGGAAATGTCAGCACTGTGGATCTGAAAAGACTCCACAGTGGCGAGCTGGTCCACTCGGGCCAAAAACCCTTTGTAATGCCTGTGGGGTTAGGTTTAAGTCCGGTCGGCTTGTCCCGGAGTACCGTCCGGCGAGCAGCCCAACTTTTCGTAGCGAATTGCATTCTAATTCCCATCGGAAGATAATCGAGATGAGGAAGCAGAAGCAAATGGGAAAAGTTTGA 891 0.4747 MSAPNPYLHVLTNHHLLFSQSRNISKPHTPPGVSFLSSHFLLLQQLSVTPNRCNIRQHLRGMEALGTVDDLLDFSSDIGEDDDDVVDRTRKSIPSNAECKLPSFDPLGQDDPNHSFSEFADEELEWLSNKDAFPAVETFVDISSIQPNLSKQQGTANGNSNNSTNNITLLNGFDHLKVPVRARSKCRSRPRSTTADISSRQSWWKLPSSQISRAEVLKIPTIGRKCQHCGSEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFRSELHSNSHRKIIEMRKQKQMGKV 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272500g00003 296 ProSitePatterns GATA-type zinc finger domain. 226 251 IPR000679 GO:0006355|GO:0043565
Stsc272500g00003 296 SMART GATA_3 220 270 IPR000679 GO:0006355|GO:0043565
Stsc272500g00003 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 283 - -
Stsc272500g00003 296 Pfam GATA zinc finger 226 259 IPR000679 GO:0006355|GO:0043565
Stsc272500g00003 296 PANTHER GATA TRANSCRIPTION FACTOR 54 292 - -
Stsc272500g00003 296 CDD ZnF_GATA 225 273 IPR000679 GO:0006355|GO:0043565
Stsc272500g00003 296 Gene3D - 221 295 IPR013088 GO:0006355|GO:0008270
Stsc272500g00003 296 FunFam GATA transcription factor 217 296 - -
Stsc272500g00003 296 ProSiteProfiles GATA-type zinc finger domain profile. 220 256 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272500g00003 Stsc-Chr272500 13812 18046 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272500g00003 67 293 C2C2-Gata Transcription Factor Family AT4G32890 38.951 5.87e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc272500g00003 GATA 1.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272500g00003 - - ahf:112727508 410.223