Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272498g00004 ATGTCTCACAGGAAGTTCGAGCACCCTAGACATGGTTCTCTCGGATTTCTCCCGAGGAAGCGTGCTGCTCGTCACAGAGGAAAAGTGAAGGCATTCCCCAAGGATGATCCATCAAAGTCACCCAAGCTTACTGCTTTCTTGGGTTACAAGGCTGGTATGACCCACATTGTTCGTGAGGTCGAGAAACCAGGATCCAAGCTTCACAAGAAGGAGACTTGTGAGCCTGTTACAATTATTGAGACCCCTCCAATGGTTATTGTTGGAGTTGTGGGTTATGTGAAAACCCCAAGGGGTCTGAGGACTTTGAACACTGTATGGGCTCAGCATTTGAGTGAGGAGGTGAAGCGTAGGTTTTACAAGAACTGGTGCAAGTCCAAGAAGAAGGCATTCACCAAGTACTCAAAGCAGTATGAATCTGAGGACGGAAAGAAGAGCATTGAGGCACAGCTTGAGAAGATCAAGAAGTATGCAACTGTTGTCCGTGTTTTGGCTCACACTCAGATCAGAAAAATGAAGGGTTTGAAGCAAAAGAAGGCCCATATCATGGAGATCCAGGTCAACGGTGGCACAATTGCCCAGAAGGTGGACTTTGCCTATGGTTTCTTTGAGAAACAGGTTCCTATCGATGCTGTGTTCCAGAAGGATGAAATGATTGACATCATTGGTGTCACAAAAGGTAAGGGTTATGAAGGTGTTGTGACCCGTTGGGGTGTGACTCGTCTTCCCCGCAAGACCCACAGGGGTTTGAGAAAGGTGGCTTGTATTGGTGCTTGGCATCCTGCTAGGGTATCCTTCACTGTTGCCAGGGCTGGTCAGAACGGATACCACCACAGAACTGAGTTGAACAAGAAGATTTACAAACTTGGCAAAGCTGGAACTGATTCTCACTCCGGTGATACTGAGTTTGATAGAACTGAGAAGGACATTACCCCCATGGGTGGCTTCCCCCACTATGGTATTGTGAAGGATGATTANNNNNNNNNNGTTGCACAGTTGGTCCAAAGAAAAGGGTTCTTACATTGCGCCAATCCCTCCTCAAGCAGACTTCCCGTGTCGCCCTGGAGGAGATCAAGCTCAAGTTCATCGACACATCGTCCAAGTTTGGACATGGTCGCTTCCAGACAACACAAGAGAAGCAGAAGTTCTTTGGACGCCTCAAGGCTTAATTATGGTGAATGGATGGAAATGCTTCAAGTTAGATTTATATTTGCCTTATCTTTATAA 1224 0.4641 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKSPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVIVGVVGYVKTPRGLRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYSKQYESEDGKKSIEAQLEKIKKYATVVRVLAHTQIRKMKGLKQKKAHIMEIQVNGGTIAQKVDFAYGFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKLGKAGTDSHSGDTEFDRTEKDITPMGGFPHYGIVKDDXXXXVAQLVQRKGFLHCANPSSSRLPVSPWRRSSSSSSTHRPSLDMVASRQHKRSRSSLDASRLNYGEWMEMLQVRFIFALSL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272498g00004 407 MobiDBLite consensus disorder prediction 350 378 - -
Stsc272498g00004 407 Pfam Ribosomal protein L3 1 324 IPR000597 GO:0003735|GO:0005840|GO:0006412
Stsc272498g00004 407 Gene3D Translation factors 44 324 - -
Stsc272498g00004 407 MobiDBLite consensus disorder prediction 1 20 - -
Stsc272498g00004 407 FunFam 60S ribosomal protein L3 226 274 - -
Stsc272498g00004 407 FunFam 60S ribosomal protein L3 44 165 - -
Stsc272498g00004 407 SUPERFAMILY Translation proteins 4 324 IPR009000 -
Stsc272498g00004 407 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Stsc272498g00004 407 FunFam 60S ribosomal protein L3 1 74 - -
Stsc272498g00004 407 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Stsc272498g00004 407 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 328 IPR045077 GO:0003735|GO:0005840|GO:0006412
Stsc272498g00004 407 MobiDBLite consensus disorder prediction 350 369 - -
Stsc272498g00004 407 FunFam 60S ribosomal protein L3 83 207 - -
Stsc272498g00004 407 Gene3D - 83 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272498g00004 Stsc-Chr272498 21522 24192 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272498g00004 1 324 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 88.889 0.0 595