Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272498g00003 ATGGCTGAACCTTCCAAGGTCATCCATGTTCGAAACGTGGGGCATGAGATATCCGAAAATGATTTGCTTCAGCTCTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTGATGTTGCGTGCAAAAAATCAGGCTCTTGTCCAAATGCAAGATGTTGCTTCAGCCGTTAATGCTTTACAATTTTATGCAAATGTTCAGCCAAGCATAAGGGGGAGGAATGTTTATGTCCAGTTTTCCTCGCATCAAGAACTAACATCAATGGATCAAACCCAAGGGCGTGGAGATGAGCCAAATCGAATTCTCTTAGTTACAATTCACCACATGATGTATCCTATAACAGTGGATGTGCTATATCAAGTATTTTCTCCCCATGGATCTGTGGAAAAGATTGTAACATTTCAGAAGTCAGCTGGTTTTCAGGCTCTCATCCAGTATCAATCGCGTCAGCATGCTGTTGTTGCAAGAAGTACACTTCAGGGACGCAATATTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAGGGACTTTACGAACCCAAATCTTCCTACAGAGCAGAAAGGCAGACCGTCACAACCTGGATATGGCGATGCAGTTGGATATCCTCAGATGGCCAATGCTGCAGCCATTGCAGCTGCCTTTGGGGGTGGTTTGCCTCCTGGAGTAACTGGGACAAATGACAGATGTACAATTCTTGTCTCAAATCTTGATCCCGATAGAATAGATGAGGATAAGCTGTTCAACTTGTTCTCCATTTATGGGAACATTGTGAGGATTAAGCTTCTCCGCAATAAACCAGATCATGCTCTTATCCAGATGGGGGATGGTTTCCAAGCTGAGTTGGCAGTGCACTTTCTGAAGCATCCTAACATAACCCCAGGTGCTGACACGCACGAGTATGCCAATTCAAACCTCAACCGTTTCAACCGTAACGCTGCTAAGAACTACCGTTACTGTTGCTCCCCGACAAAGATCATCCATTTGTCTACACTCCCGCAAGATGTCACCGAAGAGGAGATTCTCAACCTCCTGGAGGAACATGGAACCATTGTCAACAGCAAAGTGTTTGAGATGAATGGGAAAAAGCAGGCTCTAGTTCAGTTCGAGACTGAGGAACAGGCTACTGATGCTCTTGTATGCAAGCATGCAAGTCCACTTTCTGGTTCAGTAATCCGCATCTCATTCTCACAGCTGCAGAATATATGA 1248 0.4431 MAEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALVQMQDVASAVNALQFYANVQPSIRGRNVYVQFSSHQELTSMDQTQGRGDEPNRILLVTIHHMMYPITVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQHAVVARSTLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDAVGYPQMANAAAIAAAFGGGLPPGVTGTNDRCTILVSNLDPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKHPNITPGADTHEYANSNLNRFNRNAAKNYRYCCSPTKIIHLSTLPQDVTEEEILNLLEEHGTIVNSKVFEMNGKKQALVQFETEEQATDALVCKHASPLSGSVIRISFSQLQNI 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272498g00003 415 MobiDBLite consensus disorder prediction 186 202 - -
Stsc272498g00003 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 302 - -
Stsc272498g00003 415 Gene3D - 330 412 IPR012677 -
Stsc272498g00003 415 Gene3D - 240 329 IPR012677 -
Stsc272498g00003 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Stsc272498g00003 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 343 405 IPR000504 GO:0003723
Stsc272498g00003 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Stsc272498g00003 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 308 IPR000504 GO:0003723
Stsc272498g00003 415 CDD RRM1_PTBPH3 6 80 IPR034795 -
Stsc272498g00003 415 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Stsc272498g00003 415 SMART rrm1_1 101 170 IPR000504 GO:0003723
Stsc272498g00003 415 SMART rrm1_1 7 76 IPR000504 GO:0003723
Stsc272498g00003 415 SMART rrm1_1 244 316 IPR000504 GO:0003723
Stsc272498g00003 415 SMART rrm1_1 339 408 IPR000504 GO:0003723
Stsc272498g00003 415 SUPERFAMILY RNA-binding domain, RBD 96 197 IPR035979 GO:0003676
Stsc272498g00003 415 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 3 393 - -
Stsc272498g00003 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 412 IPR000504 GO:0003723
Stsc272498g00003 415 MobiDBLite consensus disorder prediction 186 211 - -
Stsc272498g00003 415 SUPERFAMILY RNA-binding domain, RBD 241 409 IPR035979 GO:0003676
Stsc272498g00003 415 Pfam RRM-like domain 95 174 IPR021790 -
Stsc272498g00003 415 Gene3D - 98 201 IPR012677 -
Stsc272498g00003 415 Gene3D - 1 97 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272498g00003 Stsc-Chr272498 15270 20517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272498g00003 244 408 Eukaryotic Initiation Factors Gene Family AT3G16380 24.713 2.49e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272498g00003 K14948 - gmx:100819672 761.911