Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272498g00001 ATGGTTTCAGAGCTGGCACAAGTAGTAACAGGAGGCCACCCCAACACACAAGAAAAGTGGTGGGCCCATCAACATGAACGAGGAGGAAGAAGCGCTTTTGCTATGATGCATCAGCATCAGCATGATGATGATGATGATGATGCTTCTGCATCTGGTCTCTGGGTTGGCCACAAAAGAGGGCGTCAACAACACACTCATATTCATGCTGCTTCTGCTGCTTCTTCTTCTTCTCATCAATTGTTACAACATGTCACTGCCCTCTATGCTTCACAACCACACTATTCATCAGCGACAGAAGAATCAACAAACATTGCCGCCACCGGAAGCGGCAGCGCAGCCACACCATCAACCGAAAGTGGTGCATCCTATGAAGAAACAGGGGAAAGGAAGAGGAGATACAGAGGAGTGAGGCAGAGACCATGGGGGAAATGGGCTGCGGAGATTCGAGACCCTCACAAAGCAGCAAGAGTCTGGCTCGGAACCTTCGACACGGCGGAAGCCGCCGCAAGAGCCTACGACGAAGCCGCATTGAGGTTCAGAGGAAACAAAGCCAAACTCAACTTCCCTGAAAATGTCAGATCAATCCCAATGCCAACACAATCAACCACCGTTCAGACATCACCGGAACCAATTTTCCGGCCGGTCATGGAGGCGGCGCCGTCGCGTACTTCTCAGGGCTCCTCTGAGCAGATGATGATGAGGGATTACTGGCAATACTCTGAGTTGTTGAAGAGTTCCGGTGATTACTTTCATGGATTTGATCAGTGGCTTTACAATTCGCAAATGAATTTGCCAATTCAATCTTCATCGCCATTATATACTTCATCTCCTTCTTCGTCTTCGTCTTCGATTTCAATGTCGTCTTCATCGCCAATTGAGTTTTCAGGATCTACTGGTCAATTGTCCTCTGCTTCGTTTCCTCTGTTTTCTTCTTCTTCAGCTCAGCAGCAACTAGGGGTTTTCCGGCCCCCGGGATACTATTCCGGCGATGCCGGAGGAGGGAGCGGCGGATTGGGTTTTCCACCAGCTTCAACGTGGCCGGATACCGGTGGCTCTCGTCCTCCTCGGGGTTGA 1074 0.5037 MVSELAQVVTGGHPNTQEKWWAHQHERGGRSAFAMMHQHQHDDDDDDASASGLWVGHKRGRQQHTHIHAASAASSSSHQLLQHVTALYASQPHYSSATEESTNIAATGSGSAATPSTESGASYEETGERKRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVRSIPMPTQSTTVQTSPEPIFRPVMEAAPSRTSQGSSEQMMMRDYWQYSELLKSSGDYFHGFDQWLYNSQMNLPIQSSSPLYTSSPSSSSSSISMSSSSPIEFSGSTGQLSSASFPLFSSSSAQQQLGVFRPPGYYSGDAGGGSGGLGFPPASTWPDTGGSRPPRG 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272498g00001 357 PRINTS Ethylene responsive element binding protein signature 155 171 IPR001471 GO:0003700|GO:0006355
Stsc272498g00001 357 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700|GO:0006355
Stsc272498g00001 357 SMART rav1_2 132 195 IPR001471 GO:0003700|GO:0006355
Stsc272498g00001 357 MobiDBLite consensus disorder prediction 98 122 - -
Stsc272498g00001 357 FunFam Ethylene-responsive transcription factor 2 131 190 - -
Stsc272498g00001 357 CDD AP2 132 191 IPR001471 GO:0003700|GO:0006355
Stsc272498g00001 357 MobiDBLite consensus disorder prediction 331 357 - -
Stsc272498g00001 357 Gene3D AP2/ERF domain 131 191 IPR036955 GO:0003700|GO:0006355
Stsc272498g00001 357 PANTHER DNA-BINDING DOMAIN 82 276 IPR044808 GO:0003700|GO:0009873
Stsc272498g00001 357 MobiDBLite consensus disorder prediction 98 134 - -
Stsc272498g00001 357 ProSiteProfiles AP2/ERF domain profile. 132 189 IPR001471 GO:0003700|GO:0006355
Stsc272498g00001 357 MobiDBLite consensus disorder prediction 269 296 - -
Stsc272498g00001 357 SUPERFAMILY DNA-binding domain 132 190 IPR016177 GO:0003677
Stsc272498g00001 357 Pfam AP2 domain 132 181 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272498g00001 Stsc-Chr272498 4451 6326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272498g00001 119 247 AP2-EREBP Transcription Factor Family AT5G50080 62.016 6.29e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc272498g00001 AP2 6.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272498g00001 - - adu:107467893 341.658