Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272493g00001 ATGCTCCATAACCTTCGAATCCCTTCCTCCCATGGAGAAGGAGGACCACCATTCTCTCCATTCTCCATCCATGCTGAAGATAATTTTGACACGCACCACCACCTCCACCTCTTCTCCACCGATCACTTTCGAATGTACGACTTCAAGGTTCGTAACTGTCCACGTGCCAGGTCGCACGACTGGACGGACTGCCCCTACGCACACCCCGCCGAGAAGGCTCGCCGGAGAGACCCTCGAAAGTTCCAGTACTCCGGCACGGCGTGCCCGGACTTTAGAAAAGGGCATTGCCGGAAAGGTGACTCTTGCGAGTTCGCTCACGGCGTGTTCGAGTGCTGGCTCCACCCTCAAAGATACAGGACTCAGCTCTGCAAGGACGGCACAGCCTGCCGCCGCCGCGTCTGCTTCTTCGCACACGTGCCGGATCAGCTGCGCGTGCTGGCTCCCAACTCGGCCGAGTCGCAACTCAGCGACTCGCCGAATCTTCGTGGAAATAAAAGCAACAATGTTTCTTCGCCCACCTCGGTTCTTAAGTACTCTAGTTATGTATCGGAATCGCCGCCATCTTCGCCTGTTGATCCTGGACACGGCGTCGTTCCGTTCAGTACGGTGCGGAAGTTGGTGAGTTCAATGCGGAACGTGCAGCTTGAGGAAATGCGTTATGGGCCTGAGATGGGCTGTGTATTTGGGCCTCGGAGTTTGGGCCTTGGCCCAATGAGTGGGTGGAAGGAGGAAGAACCTACAATGGAGAGGGTGGAATCTGGGAGAGATATACGGGCGAGAATGTATGCGAAGCTGAGTAGGGAGAACTCATCGATTGGGAGAAGCGAGGGTCCTTTACCACCTTTACCTGATATTGGATGGGTCTCTGAACTCCTCAAGTGA 882 0.5544 MLHNLRIPSSHGEGGPPFSPFSIHAEDNFDTHHHLHLFSTDHFRMYDFKVRNCPRARSHDWTDCPYAHPAEKARRRDPRKFQYSGTACPDFRKGHCRKGDSCEFAHGVFECWLHPQRYRTQLCKDGTACRRRVCFFAHVPDQLRVLAPNSAESQLSDSPNLRGNKSNNVSSPTSVLKYSSYVSESPPSSPVDPGHGVVPFSTVRKLVSSMRNVQLEEMRYGPEMGCVFGPRSLGLGPMSGWKEEEPTMERVESGRDIRARMYAKLSRENSSIGRSEGPLPPLPDIGWVSELLK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272493g00001 293 SUPERFAMILY CCCH zinc finger 82 111 IPR036855 GO:0046872
Stsc272493g00001 293 ProSiteProfiles Zinc finger C3H1-type profile. 82 109 IPR000571 GO:0046872
Stsc272493g00001 293 PANTHER UNKEMPT FAMILY MEMBER 36 293 IPR045234 -
Stsc272493g00001 293 SMART c3hfinal6 117 140 IPR000571 GO:0046872
Stsc272493g00001 293 SMART c3hfinal6 82 108 IPR000571 GO:0046872
Stsc272493g00001 293 Gene3D - 82 146 - -
Stsc272493g00001 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 107 IPR000571 GO:0046872
Stsc272493g00001 293 FunFam Zinc finger CCCH domain-containing protein 66 40 108 - -
Stsc272493g00001 293 MobiDBLite consensus disorder prediction 151 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272493g00001 Stsc-Chr272493 8794 10102 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272493g00001 37 219 C2H2 Transcription Factor Family AT5G12850 48.469 1.07e-55 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc272493g00001 zf-CCCH 5.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272493g00001 - K23048 adu:107461217 496.893