Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272492g00005 ATGGGGTCTCGCTTGGATCAGTATGAGATCATGGAGCAGATCGGTAGAGGAGCATTTGGAGCTGCAATTCTAGTTCATCACAAGACAGAGAAGAAAAAATATGTGTTGAAGAAAATAAGGCTTGCCAGGCAAACTGAAAGGTGCAGAAGAGCTGCTCATCAAGAGATGGTTCTTATTGCTCGAATTCGGCATCCATACATTGTGGAATTCAAGGAGGCTTGGGTTGAGAAGGGTTGTTTTGTCTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAATCAAACGGGGTATACTTTCCGGAGGAGAAACTCTGCAAGTGGTTTGCACAATTACTCTTAGCTGTGGAATATCTGCATTCCAACTATGTATTACATCGTGACTTAAAGTGTTCAAACATTTTTCTTACCAAGGATCTGGATGTTCGCCTAGGGGATTTTGGACTTGCCAAGACACTAAAAGCAGATGATTTGGCATCTTCAGTGGTAGGAACTCCCAACTACATGTGTCCTGAACTGCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGGTGCTGTATATATGAGATGGCTGCTCATCGTCCTGCATTTAAAGCTTTCGATATGGCAGGATTGATAAGTAAGGTTAACCGTACGGCAATTGGCCCATTGCCTTCTTGTTATTCCCCATCTCTGAAAATGCTAATAAAGTGCATGCTGAGAAAAAATCCTGAGCATCGTTTATCAGCATCTGAGATCTTAAAACACCCCTATCTGCAACCTTATGTTCATCAATATCATCCATCTTTTTGTCTGCCGACAACCTGTTCTCCTCAAAAGTCTATTGGAGTTTTCCATGATCCTCGAAAAAATAGGCCTGAAGGCCAAAATAATAATAGCTCAAGCAATGACAAAGATTGTTTGATGTCAAATGGGAGAAACACGGCAATGACAGTGCCGAATTTTGGTAGAAAAACCACAATTCAGGCATTAGTTGTTGATGATGGTTCTGAGGATCTCCTTCCTAGTGAAGAAGGAAACGGTTCCAGCAATGGCAGTGCTAAAACAGAAGAGGTGGTGAAGCCATCTCGTAATGAAAACCATCCTAATATTGTATCTAAGGAACAAAACCTTTTCAAGAATACAATGATTGCTTTAAAAGACAGAAGAGTTAGAGAATCAAGTTCTCCAATGAGAGGCAATCACATAAAGGCTGGCAGTGCACCAATCCAAAAAATACATACAGAGATACCTTCCAAATTGCCCAAACCTAGTTTTGGTTTGAAGCCTAATTTAGAGGCACCAACTACACCTGCAAAAGCAACCTTTGATTCTGCAAAGGGATCACATAATTCAAAGTATCAGTTACTGATGACAGAATCATTGCCAAAAACCAGACCTCTATCCGGCCCGACCAAACAAATAGTAGGAAATGTAGTTCCTTCCAAGCCAAGGCAAATGACTCCTCCAAGATTACTCAGACCACCTTCATCTCCATCTCCATCTCCATCTCCAGTTCGTATGAGGCAGGCCAGGCTTGATTTTCCAAACATAGTGAATGATGTAAGAAACTCAAATCCAGTGGCTCATGAGCCTAAGATGAGTCATCACAGGTTGAGTAACAGTCATATACCACGCGTTTCGAGAGATATTAGGAAAGAGCCTCGGAAGTCTTCTGAACAGTGTTCGAAAGGAATGCAAACCGACAGCAGCAATTCAGTCTCATCTTCAGTCTCTATTCAAGGATTTGAACTTTGTGATGATGCAACTACTTTTATGGACTTGAGTGAATTCACACTTGCAGATCATGAGAGTATAAACCACATTGAGAATGTGGAAACACATCCAAATAGCAACTTGCCTCCTACGCAATCCGAGACATCTGAAAATTTGTCTTGGGAATCTACAAGGCTTCCACGGAGCTTCCATAATAGAAACACAAGCAATGAGAATGTAAGTTCCACTTTATCTCAGGATCACTCAGTTCAAGATCATAAGGGAATTTTCAGGTCAGATGATAGTTGTCCCATAAATCAGACAAACATATCTGCTGCCTCAGGGTGTGGTAAAAAATCTTTACAGCCCTCAGCTTCAGCTACAAAACAATCCAAGGAGTTTCAAGACATTTCTATGGAAACTACTTCAGCTAAGTTTCCCATTTCTGAAGAGAAGCCTGCTTGTGAAGAAAGCAGACCGGATAATAGGCCTGATAAAGATGGCCAGCCTAGTGGTGATGAAGAATTCACGGTAACCAAAAGATTGTCATCAGTGGCTGAAACTGATCCTTTGATAGTCTCTACTGAAATTCCAAGCCAAAGCATTTTGCAAGAAGAGAAAGGAGCAGTTTTACAGAACCCATCAGCTGATCAACTTCCTCCAGCTTATGGTGGTGTCATCCATGTTATACGGCATAGTAGTTATCGTGTCGGGAGTGAGCAGCCGGTGGAGGAATCTGTAGAAGTGGGAGTTCAAAATGTTGATGTTGGTAAGTTCATCAGCATTGTAAGGGATGATTCAGAAATGAGAAATGTGAGCACTCCTATGACCCTTAAATCTTCAAGTTGTTCTGATTATTTAGAATCTCCTAATGTTGAATCTCCAAGTAGTCTTGACCAACCTGCCATTAAGGATCAAGATTTGAAAATCCCTGATTCCATGGTATCAAAATCTGATTCCACTAAGGAAACTAAGTATGAGAGTACTAAAGTGAAAGAGGAAACAGAGGCAAAGGAAACTCTGGATGTGAAATCTTCAAGGCAGAGAGCTGAGGCACTTGAAGGCCTCTTAGAACTTTCTGCAGACTTGCTGGAGCAGAACAAATTGGAGGAACTCTCAATTGTTTTGAAGCCATTTGGAAAAGATAAGGTATCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTGAAAGGATTGATGATGGAGGATAGTGGGGGAAGAGCATGA 2955 0.4146 MGSRLDQYEIMEQIGRGAFGAAILVHHKTEKKKYVLKKIRLARQTERCRRAAHQEMVLIARIRHPYIVEFKEAWVEKGCFVCIVTGYCEGGDMAALMKKSNGVYFPEEKLCKWFAQLLLAVEYLHSNYVLHRDLKCSNIFLTKDLDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKVNRTAIGPLPSCYSPSLKMLIKCMLRKNPEHRLSASEILKHPYLQPYVHQYHPSFCLPTTCSPQKSIGVFHDPRKNRPEGQNNNSSSNDKDCLMSNGRNTAMTVPNFGRKTTIQALVVDDGSEDLLPSEEGNGSSNGSAKTEEVVKPSRNENHPNIVSKEQNLFKNTMIALKDRRVRESSSPMRGNHIKAGSAPIQKIHTEIPSKLPKPSFGLKPNLEAPTTPAKATFDSAKGSHNSKYQLLMTESLPKTRPLSGPTKQIVGNVVPSKPRQMTPPRLLRPPSSPSPSPSPVRMRQARLDFPNIVNDVRNSNPVAHEPKMSHHRLSNSHIPRVSRDIRKEPRKSSEQCSKGMQTDSSNSVSSSVSIQGFELCDDATTFMDLSEFTLADHESINHIENVETHPNSNLPPTQSETSENLSWESTRLPRSFHNRNTSNENVSSTLSQDHSVQDHKGIFRSDDSCPINQTNISAASGCGKKSLQPSASATKQSKEFQDISMETTSAKFPISEEKPACEESRPDNRPDKDGQPSGDEEFTVTKRLSSVAETDPLIVSTEIPSQSILQEEKGAVLQNPSADQLPPAYGGVIHVIRHSSYRVGSEQPVEESVEVGVQNVDVGKFISIVRDDSEMRNVSTPMTLKSSSCSDYLESPNVESPSSLDQPAIKDQDLKIPDSMVSKSDSTKETKYESTKVKEETEAKETLDVKSSRQRAEALEGLLELSADLLEQNKLEELSIVLKPFGKDKVSPRETAIWLAKSLKGLMMEDSGGRA 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 615 665 - -
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 346 361 - -
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 615 750 - -
Stsc272492g00005 984 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272492g00005 984 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 850 876 - -
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 850 914 - -
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 885 914 - -
Stsc272492g00005 984 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 725 749 - -
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 525 578 - -
Stsc272492g00005 984 CDD STKc_Nek 7 262 - -
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 468 484 - -
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 297 324 - -
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 533 563 - -
Stsc272492g00005 984 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 285 324 - -
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 676 720 - -
Stsc272492g00005 984 Gene3D Transferase(Phosphotransferase) domain 1 90 322 - -
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 491 506 - -
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 564 578 - -
Stsc272492g00005 984 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Stsc272492g00005 984 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 445 462 - -
Stsc272492g00005 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Stsc272492g00005 984 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 7 933 - -
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 341 379 - -
Stsc272492g00005 984 MobiDBLite consensus disorder prediction 394 511 - -
Stsc272492g00005 984 SUPERFAMILY Protein kinase-like (PK-like) 5 314 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272492g00005 Stsc-Chr272492 18106 23536 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272492g00005 12 273 MAP Kinase Kinase Kinase AT3G06030 32.847 3.18e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc272492g00005 Pkinase 2.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272492g00005 K08857 - gmx:100818943 1188.33