Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272487g00001 ATGGCTCTTGAATCAGATTTGGATGCAAAACTACTTGATGATGATGAGCGCCTCAACCTGCCCCAAGTTGAGAAACAAGAAGATGAACAAGATGACTTGTTTGCTGAAATGGCTTGGTCAAGTGTGATCAATATGGCTTTGAAGACCACAATAGAGCTTGGTGTATTTGACATCATAGTCAAAGTAGGGGAAGGTGCAAAGCTTTCAGCAAAAGACATTGTGGATCAAATTGAAACCAACAATCCTGAAGCAGCAACAATGTTGGATCGTGTTCTTAGGCTTCTTGCAAGTCACTCATTGCTGTGCTGTTGTGTTGTTGAAGATCCACAAAATAGTAACTTGCATCAGAGGCTGTATAGTCTCTCACCTTGTTCCAAATATTTTGTGAATGATGCTGATGGCGTGTCTTTGGGACCCGCATTTTTGCTGTCGTTTGATAAAGTCTTCTACCAAAGCTGGGGAGTTGAAGTGATAAGATACAATGATTGGGGTGTTGCAATGGGTGTCAGTGCCGACGATGAGGTTGGTGCGATAGGGTGCCTGTGGCAAGGGTGGGATTTGGACCAGAGCCGGGGATGA 579 0.4421 MALESDLDAKLLDDDERLNLPQVEKQEDEQDDLFAEMAWSSVINMALKTTIELGVFDIIVKVGEGAKLSAKDIVDQIETNNPEAATMLDRVLRLLASHSLLCCCVVEDPQNSNLHQRLYSLSPCSKYFVNDADGVSLGPAFLLSFDKVFYQSWGVEVIRYNDWGVAMGVSADDEVGAIGCLWQGWDLDQSRG 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272487g00001 192 Gene3D - 41 159 IPR036388 -
Stsc272487g00001 192 PANTHER O-METHYLTRANSFERASE 37 155 IPR016461 GO:0008168
Stsc272487g00001 192 SUPERFAMILY "Winged helix" DNA-binding domain 32 131 IPR036390 -
Stsc272487g00001 192 FunFam Caffeic acid 3-O-methyltransferase 13 128 - -
Stsc272487g00001 192 Pfam Dimerisation domain 45 96 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272487g00001 Stsc-Chr272487 1494 2173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272487g00001 21 153 Monolignol Biosynthesis Gene Families AT1G77520 38.462 1.73e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272487g00001 K13066 - aip:107606823 202.986