Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc272485g00003 | ATGGCTCCCAAATCCAAATCCAATACCCCGAAACCGAAACCCTCCTCCGCCGCCCCATCCTCCATCTTCAAACCTGGCACCAGGGTAGAGGTCAGCTCCGACGACGACGGATTCCGTGGTTCTTGGTTCTCCGGAACCGTCACCCGCCGCGTAGGGGCGGACAAGTTCACGGTCGAGTACGACAACCTCTTGGCCAGTGAGCGGAGCAAGAAGAAGCTCAAAGAACAGCTCGGCTTCCACCAGCTTCGCCCGCTTCCTCCGGAGGAGGCAGGCGCCGAATTCAAGTTCGGCGATGAGGTTGACGCGTTCCACAACGACGGTTGGTGGGAGGGGAGTATCACGAAGGAGCTGGAGAATGGGAAATTCGCTGTGTATTTCAGAGGGTCCAGAGAGCAGATCGAGTTTACCAAGGACCAGCTGAGAATCCATCGCGAGTGGCTGAATGACAAGTGGGATCCGCCGTTTGTGCAGCGAGAACAAAAAGAGAAAGGAAAGGAAGTGATGTCGACATCAAATGTGACGTCTGGTGATGAAGCTTTGAAAGAGAAGGAAGAGTTGTTGACACCAAATGTTGTTGATGAAACTGCAAAAGAGTCTACTTTTAGCCCAGGGATGCTGGTTGAGGTAAGCAATGACGAGGAAGGTTTCCAAGGAGCTTGGTTTTCTGCTACTGTTATTGAAGTAATTGGAGAGGATAGGTTCCTTATTGAGTACAAGACTCTGGTGGATGATGATTCCAAGCTTTTGAGAGAGGAGGCTGATATCTGGCACATAAGGCCCCCGCCCCCAGCAACTTCTGGAAACGCTGAATTCAGTTATCTTGAAGAAGTGGATGCTATGCACAACGATGGGTGGTGGGTTGGTGTAATTGCCAAAGTTCTTGGTGACTCAAAGTATGTAGTTTATTTCAGGAACACTGATGAAGAAATAGAGTTTCCAAACTCCCAGTTGAGGCCACATCTGGACTGGATTGGTGGCAAATGGGTCATGGCTTCTAAGGCGTTGACATTGTGA | 1014 | 0.5049 | MAPKSKSNTPKPKPSSAAPSSIFKPGTRVEVSSDDDGFRGSWFSGTVTRRVGADKFTVEYDNLLASERSKKKLKEQLGFHQLRPLPPEEAGAEFKFGDEVDAFHNDGWWEGSITKELENGKFAVYFRGSREQIEFTKDQLRIHREWLNDKWDPPFVQREQKEKGKEVMSTSNVTSGDEALKEKEELLTPNVVDETAKESTFSPGMLVEVSNDEEGFQGAWFSATVIEVIGEDRFLIEYKTLVDDDSKLLREEADIWHIRPPPPATSGNAEFSYLEEVDAMHNDGWWVGVIAKVLGDSKYVVYFRNTDEEIEFPNSQLRPHLDWIGGKWVMASKALTL | 337 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc272485g00003 | 337 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Stsc272485g00003 | 337 | PANTHER | AGENET DOMAIN-CONTAINING PROTEIN-RELATED | 195 | 333 | - | - | |
| Stsc272485g00003 | 337 | Pfam | Agenet domain | 26 | 87 | IPR008395 | - | |
| Stsc272485g00003 | 337 | Pfam | Agenet domain | 97 | 134 | IPR008395 | - | |
| Stsc272485g00003 | 337 | Pfam | Agenet domain | 276 | 320 | IPR008395 | - | |
| Stsc272485g00003 | 337 | Pfam | Agenet domain | 204 | 263 | IPR008395 | - | |
| Stsc272485g00003 | 337 | Gene3D | - | 188 | 271 | - | - | |
| Stsc272485g00003 | 337 | CDD | Tudor_Agenet_AtDUF_rpt1_3 | 201 | 263 | - | - | |
| Stsc272485g00003 | 337 | CDD | Tudor_Agenet_AtDUF_rpt2_4 | 97 | 142 | - | - | |
| Stsc272485g00003 | 337 | CDD | Tudor_Agenet_AtDUF_rpt2_4 | 274 | 319 | - | - | |
| Stsc272485g00003 | 337 | CDD | Tudor_Agenet_AtDUF_rpt1_3 | 23 | 87 | - | - | |
| Stsc272485g00003 | 337 | Gene3D | - | 17 | 71 | - | - | |
| Stsc272485g00003 | 337 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| Stsc272485g00003 | 337 | SMART | agenet_At_2 | 92 | 148 | IPR014002 | - | |
| Stsc272485g00003 | 337 | SMART | agenet_At_2 | 199 | 266 | IPR014002 | - | |
| Stsc272485g00003 | 337 | SMART | agenet_At_2 | 269 | 325 | IPR014002 | - | |
| Stsc272485g00003 | 337 | SMART | agenet_At_2 | 21 | 90 | IPR014002 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc272485g00003 | Stsc-Chr272485 | 5506 | 8292 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc272485g00003 | 33 | 146 | PHD Transcription Factor Family | AT5G58610 | 30.147 | 7.00e-08 | 52.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc272485g00003 | - | - | gmx:100805605 | 405.986 |