Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272483g00005 ATGAACCTCTGGACAGACGACAACTCCTCCGTTATGGAGGCCTTCATGACCTCCTCCGACCTTTCTTCCCTCTGGCCTCCGCCACCTCCTCCGCCTCAATCCGCCGTATTCAATCAGGACACCCTCCAGCAACGCCTCCAGGCTCTCATCGAAGGCGCTAGGGAGAGCTGGACCTATGCTATTTTCTGGCAGTCTTCCTATGACTACCCCTCCTCCTCCTCCACCGCCGTCCTCGGCTGGGGCGACGGTTATTACAAAGGCGATGAAGACAAGGGAAAGGCCAAATCCACCAAAACCACTACCCCCGCTGAGCAGGATCACCGTAAAAAGGTCCTCCGCGAGCTCAATTCCCTGATCTCTGGCTCCGCCGCCGCCCCCTCCGACGACGTTGAAGAGGAAGTCACCGACACCGAGTGGTTCTTCCTCGTCTCCATGACGCAGTCCTTTGTAAGCGGAACCGGCCTCCCCGGCCAGGCTTTTTACCACTCCAGCCCGGTCTGGCTCACAGGCCCGGACAGACTTGCCGGTTCGTCGTGCGAGCGGGCCAGACAGGGCCAGGTCTTCGGGCTCCAAACCCTGGTTTGCATACCTTCCTCAAACGGCGTGGTTGAGCTGGGCTCTACGGAGATGATCTTCCAAAACCCCGATCTGATGAACAAGGTTAGGGTTCTCTTCAATTTCAATAGCAACAGCATCGACGTGGGCTCATCCTGGCCGTTAACCGGCAGCACAACCACCACAGCCGCCGATCAAGGTGAGAACGATCCTTCTTCGTTATGGCTTAACGACTCTGAAATTAGGGATTCTGTTACCACCGTTACTACCGTTACAACCACCACTCCTGCCTCCGTTATTTCCGTTAACCCTGCTTCCAGTGCCTTGGCGGAAACCCCAAGCTCCGTTCACTTGCCCAATAATAACAACAACACGGCTGCTTCTCACGCTGGTGGCGCGTCTCAATCACAGAACCGAAGCTTCTTCTCCAGGGAGTTGAACTTTTCGGAGTTTGGATTTGACGGTAACGCTGTCAAAACCGGGAACGGCCAGCATCATTCGCTCAAGCCGGAATCCGGTGAGATTCTGAGCTTCGGCGAAAGCAAGAGAAGCTCCTACAGCGGAGGCGGAGGCGGAGGCGCCGGAAACGGGAACTTCTTCTCTGGCCAATCGCAGTTCGTTGCTGCAGCGGAGGATAACAACGGGAAAAAGAGGAAGTCGCCGAATTCGAGAGGAAGCAACAACGACGATGGCATGCTCTCCTTCACATCCGGCGTGATTCTTCCGCCGTCGAACATGAAATCCAGCGGCGGAGGCGGCGATTCCGACCACTCAGACCTGGAGGCCTCGGTGGTGAAGGAGAATGAAAGCAGCAGAGTGGTGGAGCCGGAGAAGCGGCCAAGAAAAAGAGGGCGTAAGCCGGCGAATGGCAGAGAGGAACCTTTGAACCACGTGGAAGCAGAGAGGCAGAGAAGGGAGAAGCTCAACCAGCGATTCTACGCCCTCCGTGCCGTAGTTCCAAACGTTTCAAAGATGGACAAAGCTTCACTCCTTGGGGACGCCATTTCCTACATCACAGAGCTCAAGACAAAGCTTCAAACCCTCGAAACAGACAAAGATGGATTAGAGAAGCAGCTTGATTCAGTGAAGAAGGATATTGATAAGGCCAAAAAGGAAGCTACTTCAGCTCCTCCTCCTCTTCCAGACAAGGAACTAAGGATATCCTCCAACTGTGGTGGGAAGCTTATTGATTTGGATATAGACGTGAAGATAATTGGGTGGGATGCAATGATAAGAATCCAATGCAGCAAGAAGAACCACCCTGCGGCGAGATTGATGGCGGCGCTGATGGAGCTAGACTTGGACGTCCACCACGCCAGCGTGTCTGTGGTAAATGATTTGATGATACAGCAAGCGACGGTGAAGATGGGAAGCCGGTTCTACACGCAGGAGCAGCTCCGGTTGGCACTAACATCCAAAGTTGGTGGTGATGTACGGTAG 1995 0.5459 MNLWTDDNSSVMEAFMTSSDLSSLWPPPPPPPQSAVFNQDTLQQRLQALIEGARESWTYAIFWQSSYDYPSSSSTAVLGWGDGYYKGDEDKGKAKSTKTTTPAEQDHRKKVLRELNSLISGSAAAPSDDVEEEVTDTEWFFLVSMTQSFVSGTGLPGQAFYHSSPVWLTGPDRLAGSSCERARQGQVFGLQTLVCIPSSNGVVELGSTEMIFQNPDLMNKVRVLFNFNSNSIDVGSSWPLTGSTTTTAADQGENDPSSLWLNDSEIRDSVTTVTTVTTTTPASVISVNPASSALAETPSSVHLPNNNNNTAASHAGGASQSQNRSFFSRELNFSEFGFDGNAVKTGNGQHHSLKPESGEILSFGESKRSSYSGGGGGGAGNGNFFSGQSQFVAAAEDNNGKKRKSPNSRGSNNDDGMLSFTSGVILPPSNMKSSGGGGDSDHSDLEASVVKENESSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKTKLQTLETDKDGLEKQLDSVKKDIDKAKKEATSAPPPLPDKELRISSNCGGKLIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRLALTSKVGGDVR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272483g00005 664 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 480 544 IPR036638 GO:0046983
Stsc272483g00005 664 Gene3D - 469 559 IPR036638 GO:0046983
Stsc272483g00005 664 CDD bHLH_AtAIB_like 474 549 - -
Stsc272483g00005 664 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 477 526 IPR011598 GO:0046983
Stsc272483g00005 664 FunFam Transcription factor bHLH13 470 544 - -
Stsc272483g00005 664 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 42 225 IPR025610 -
Stsc272483g00005 664 SMART finulus 483 532 IPR011598 GO:0046983
Stsc272483g00005 664 PANTHER MYC 13 658 IPR045084 GO:0003700|GO:0006355
Stsc272483g00005 664 MobiDBLite consensus disorder prediction 410 437 - -
Stsc272483g00005 664 MobiDBLite consensus disorder prediction 444 487 - -
Stsc272483g00005 664 MobiDBLite consensus disorder prediction 365 487 - -
Stsc272483g00005 664 Coils Coil 523 557 - -
Stsc272483g00005 664 Pfam Helix-loop-helix DNA-binding domain 481 526 IPR011598 GO:0046983
Stsc272483g00005 664 MobiDBLite consensus disorder prediction 296 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272483g00005 Stsc-Chr272483 20012 22006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272483g00005 1 660 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 52.782 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc272483g00005 bHLH-MYC_N 1.1e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272483g00005 K13422 - csav:115717079 808.135