Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272482g00002 ATGGATGTTGTTGAAGTTGAAGAAAATCTTTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAAGACTCTTTCTGCAATATATTGTAAAATATTGACAATATTTCCTTCACTAGAAGCAACTAGGCCTAGGAGCAAATCTGGAATACAGGCATTATGTTCACTGCATGTAGCTTTAGAGAAGTCGAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACCTGGCAATAACCGGGGACTCCGTTCTTCTAAAATTTGAAAAGTCTAAGTCCGCACTTGTTGACAGTCTTATACTGGTGGAAGATATAGTTCCCCAGTCTATTGGGTGTCAGGTTGAGAAAATTGTGGATGAACTCACAAATACAGTTTTTGCAATTGATCCCTCAGAGAAACAAGTTGGCGATGATTTAATTGCATTGCTTCAGCAGGGGAGGAAGCTAAACAACTCTAATGACTGTAACGAACTTGAATGTTTTCATAAGGCCGCTACTAGACTTGGAGTTACATCTTCAAGAACAGCTCTTACTGAAAGAAGAGCTCTCAAAAAACTCATTGAAAGGGCTCGGGCTGAGGAGGACAAGCGGAAGGAATCAATTATTGCATATCTTTTACACCTCATGAGGAAATATTCTAAGTTGTTTAGAAGTGAGTTCTCAGATGATAATGATTCTCAAGGCTCCCAACCGTGTTCACCAACTGTTAATGGATCTGTTGAGGATAATGTTCAGACTCAAGCATTTGATAGAGTGTTTTCAAAACTTAGTTCCTTTAACTTTAAGCCGAATAATAGCAAACCAGGTCAGGTTCCCCTTCCCCCTGAAGAGTTGAGTGATGGGCATAACACCTGCCCAAAGACTCAACAGAAACTTCCACATCTTTTTTTGACTCCTAATTACAACGTAAAGAATCTTGTGGCTGGTTGGTGTGCACGGCATGGAATTCCTATTCCTGAAGGCCCTCCTGAGTCTCTTGATTTTAACTATTGGAGATTGGCTTTATCAGATACTGATTCTACAAATTCAAAATCTGTAAACAGTGTAAATTCCTGCAAGTTGAAAGGTGTCAAAGTGGTTCCAGTAGAAGAAAGCGGCATGACAGAGCAAACTGGGGTAGCTGATGTCGAAGATGGGTCTAGCCAAGAGGAAGATACTGAGCAGTATCTTAGTTTCCTGAAAGTCTTAAATGAAGGGAACGACTTGCAGGGGAAGAGTAAGGTTGTACAAAGGTTAAGGATGTTGCTAAGGGATGATGAGGATGCTAGGACATTTATGGGCGCCAATGGATTTGTTGAAGCACTTATACAGTTTCTCCAATCCACTTTGAATGAAGGAAATACGACGGATCAAGAAAATGGAGCCATGGCCCTGTTCAACCTAGCCGTGAATAATGACAGAAACAAGGAAATGATGATATCCGCCGGAATCTTACCCTTGTTGGATGAAATGATCTATAAACCTGCTTGCCATGGCTGTGCAACTGCCCTCTATCTAAATCTCTCTTGCTTTGAAGAAGCCAAGCCTGTCATTGGTTCGGGTCAGGCCGTCCCATTCCTAGTCAAGATTCTTAAATCCAGCTCTGATGTCCAATGCAAGCTTGATTCTCTTCATGCACTCTATAATCTTTCTACTGTATCCACCAACATTCCATACCTACTTTCATCTGGAATCATAGATGGCTTGCAATCCCAGCTTGTAGGCCAGGGGGACAGCGTGTGGACCGAAAAATGCATAGCTGTATTGATAAATTTAGCGGTTTCTCCTTTGGGTAGAGAGGAAATGGTTTTGTCTCCCGGAATCATAAGCACATTGGCGTCGATACTCGACACCGGTGAGCTCCTAGAGCAAGAGCAAGCCATTGCTTGTCTCCTAATTTTGTGTAACCGAAGCAAGAAATGTTGCGAGATGGTCCTTCAAGAAGGGGTCATCCCTGCATTGGTGTCAATATCAGTGAATGGGACATCAAGAGGCAGAGAAAAATCTCAAAAGCTGTTGATGCTCTTCCGAGAGCAGCGACAAGAAGAGCAATCTCCGACGACCAAGCCGCAATGCCAACCAGAAACCAGCAATTCGTCTATGGCTAATCCTGAGGTTAAACCACTGTGCAAGACTACATCTAGGAGAAAGGTGGGGAATCCTTTAAGCTTTTTGTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAG 2196 0.4244 MDVVEVEENLFAASDAKLHGEMCKTLSAIYCKILTIFPSLEATRPRSKSGIQALCSLHVALEKSKNVLQHCSECSKLYLAITGDSVLLKFEKSKSALVDSLILVEDIVPQSIGCQVEKIVDELTNTVFAIDPSEKQVGDDLIALLQQGRKLNNSNDCNELECFHKAATRLGVTSSRTALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVNGSVEDNVQTQAFDRVFSKLSSFNFKPNNSKPGQVPLPPEELSDGHNTCPKTQQKLPHLFLTPNYNVKNLVAGWCARHGIPIPEGPPESLDFNYWRLALSDTDSTNSKSVNSVNSCKLKGVKVVPVEESGMTEQTGVADVEDGSSQEEDTEQYLSFLKVLNEGNDLQGKSKVVQRLRMLLRDDEDARTFMGANGFVEALIQFLQSTLNEGNTTDQENGAMALFNLAVNNDRNKEMMISAGILPLLDEMIYKPACHGCATALYLNLSCFEEAKPVIGSGQAVPFLVKILKSSSDVQCKLDSLHALYNLSTVSTNIPYLLSSGIIDGLQSQLVGQGDSVWTEKCIAVLINLAVSPLGREEMVLSPGIISTLASILDTGELLEQEQAIACLLILCNRSKKCCEMVLQEGVIPALVSISVNGTSRGREKSQKLLMLFREQRQEEQSPTTKPQCQPETSNSSMANPEVKPLCKTTSRRKVGNPLSFLWKSKSYSVYQC 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272482g00002 731 MobiDBLite consensus disorder prediction 674 701 - -
Stsc272482g00002 731 SUPERFAMILY RING/U-box 281 321 - -
Stsc272482g00002 731 SMART arm_5 590 631 IPR000225 GO:0005515
Stsc272482g00002 731 SMART arm_5 506 547 IPR000225 GO:0005515
Stsc272482g00002 731 SMART arm_5 466 505 IPR000225 GO:0005515
Stsc272482g00002 731 SMART arm_5 421 465 IPR000225 GO:0005515
Stsc272482g00002 731 MobiDBLite consensus disorder prediction 224 242 - -
Stsc272482g00002 731 Coils Coil 175 195 - -
Stsc272482g00002 731 SUPERFAMILY ARM repeat 395 664 IPR016024 -
Stsc272482g00002 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 319 IPR013083 -
Stsc272482g00002 731 ProSiteProfiles U-box domain profile. 280 319 IPR003613 GO:0004842|GO:0016567
Stsc272482g00002 731 MobiDBLite consensus disorder prediction 222 242 - -
Stsc272482g00002 731 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 478 IPR000225 GO:0005515
Stsc272482g00002 731 PANTHER U BOX DOMAIN-CONTAINING 21 675 - -
Stsc272482g00002 731 Gene3D - 373 685 IPR011989 -
Stsc272482g00002 731 MobiDBLite consensus disorder prediction 680 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272482g00002 Stsc-Chr272482 10901 14729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272482g00002 1 730 U-box Gene Family AT1G24330 60.774 0.0 924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272482g00002 - - adu:107478647 1119.76