Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272478g00003 ATGCCTGGCAGTTTAGAACCGTTGGATTTGGGGGTTCAGATTCCGTACCACTTCAGGTGCCCAATCTCGCTTGAGCTTATGCGTGACCCCGTCACCGTCTGTACCGGTCAGACCTACGACCGTCCAAGCATCGAGTCATGGGTGGCTACCGGCAACACCACCTGTCCGGTCACACGAGCACCGCTAACGGACTTCACACTAATCCCTAATCACACACTCCGGCGGCTAATCCAAGAATGGTGCGTTGCCAACCGTGCTTTCGGCGTCGAGCGGATTCCCACGCCGAAACAGCCTGCAGACCCGTCCGTGGTTCGCTCCTTGTTGAACCAAGCCTCGTCAGATTCCGCGCCGACTCAGCTCCGAGTCAACTCGCTTCGTCGACTTAGAGGACTCGCCCGTGACTCGGATAAGAATCGCTCTCTCATTGCCTCTCTTGGCGCCGTTCAGATCTTATTAACCGTCGTTTTCTCGTGTAACGGTTCCGACGAGATGAACCATGAGGCGCTCGCAATTCTCGTGATGTTCTCGCTCGGCGAGAATGAATGCGAGTTTGTTGCGTCTGATTTGGATAAGATCCGGTACCTGTCAATCCTATTGTTTCATAGTTCCATGGAGGTCCGTGTTAACTCCGCCGCGTTGATTGAAATCGTTGCCGCCGGGACTCGGTCGTCTGAGCTCCGATCTCAGATCAGCAATGTTGACGAAATCTACGAAGGCGTGATTGATTTGCTACGGAACCCGATCTCGTTCCCGCGCGCGCTCAAGATCGGGATCAAGGCGCTGTTCGCGCTGTGTCTGGTGAAGCAGACGCGGCACAAGGCGGTGGCGGCAGGTGCGCCGACGGTTCTCGTCGACAGGCTCGCTGATTTCGAGAAGTGCGACGCTGAGAGAGCGCTGGCGACGGTGGAGCTCCTCTGCCGAGTTCCGGCGGGTTGCGCGGCGTTCGCTGAACACGCGCTGACGGTGGCACTGCTGGTGAAGATAATACTGAAGATCTCAGAGCGCGCAACAGAGTACGCCGCCGGGGCGCTTCTGGCGCTGTGCTCGGAGTCGGAGCGGTGCCAGAGGGAGGCGGTGGCGGCAGGTGTGCTGACTCAGCTTCTTCTTTTGGTCCAAAGCGATTGCACGGAGAGGGCGAAGAGGAAGGCGCAGCTGTTGCTTAAGCTGCTTCGGGATTCGTGGCCTCAAGATTCAATCGGAAATTCTGACGATTTTGCATGCAACCAGGTTTTGGTGGTGCCGCTTTGA 1248 0.5729 MPGSLEPLDLGVQIPYHFRCPISLELMRDPVTVCTGQTYDRPSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPSVVRSLLNQASSDSAPTQLRVNSLRRLRGLARDSDKNRSLIASLGAVQILLTVVFSCNGSDEMNHEALAILVMFSLGENECEFVASDLDKIRYLSILLFHSSMEVRVNSAALIEIVAAGTRSSELRSQISNVDEIYEGVIDLLRNPISFPRALKIGIKALFALCLVKQTRHKAVAAGAPTVLVDRLADFEKCDAERALATVELLCRVPAGCAAFAEHALTVALLVKIILKISERATEYAAGALLALCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSIGNSDDFACNQVLVVPL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272478g00003 415 Gene3D - 89 404 IPR011989 -
Stsc272478g00003 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Stsc272478g00003 415 SUPERFAMILY RING/U-box 12 90 - -
Stsc272478g00003 415 SUPERFAMILY ARM repeat 103 390 IPR016024 -
Stsc272478g00003 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Stsc272478g00003 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Stsc272478g00003 415 CDD RING-Ubox_PUB 15 67 IPR045210 -
Stsc272478g00003 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Stsc272478g00003 415 PANTHER WDSAM1 PROTEIN 12 396 IPR045185 GO:0061630
Stsc272478g00003 415 FunFam RING-type E3 ubiquitin transferase 8 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272478g00003 Stsc-Chr272478 27918 29165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272478g00003 1 412 U-box Gene Family AT3G19380 68.019 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272478g00003 - - gmx:100778730 680.248