Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272478g00002 ATGAGTGTTGAGAATCAAGGTCTTAATGACCTAGGGTTTTTTTGGGATAGCCAACCATGGATTCTTCCAAATTCTGATGACTTAGGTCTTAGAGAAACCAAAGAGGAGCTACACATAGAAACACCTCCTCCAACTCCAACTCCAACTCCGACCAACCACGACCTCACACCGGAAGAAACAAAGAAGAAAGAAGAAGAATTAGTGGCGGACACCGCGAAAAACAAGAAGCGGAGCCGGGCCGATAATAGAAATGGCAAGAGGCCTATGAAGAATGATGGTAGTGATCATGATCTCCACATATGGACGGAGAGGGAAAGAAGGAAGAAAATGAGGAACATGTTTGCTAGTCTTCATGCTTTGCTTCCTCAACTCCCCCCTAAGGCTGACAAGTCATCCATTGTGGATGAAGCAGTGAGCTACATCAAGACTCTCCAGAAAACCGTTGAAGATCTCGAAAAGAAAAAGCAGCAGAGGAACCAATCTGTATCTGTATCTCCGATCGCGTGCGAATCCGCCGTGACCAACCCCCAATGGAATCCTTACGACTCATCATCCTCTTCAAAGGATAACAATGCATTAACTATAACCTCCAATCACCAGGGTTCTTTGAATCCTTCTTCTTCTGCTGCTGCGAATAATTCGGCGTTTTTGGGCCCGGCTCGAGAGCCCGCGGCGTTTAAGACTTGGGCTTCGCAGAATGTGGTGGTGAACATCTGTGGAGAGGAAGCACAGTTCAGCATATGTGCGGAGAAGAAGCCTAGCCTCTTCACCACCATTGCTTTTGTGCTTGAGAAGCATAAGATTGATGTCATTTCTGCTAGCATCTTGTGCAATGATAATTCCAACAGATACATGGTCCTCGCTCACGCAAGTAAGGCTTTACTTCAATATGCAGACGCAAATACAGTGGAGGAAACTTTCAAGCTTGCAGCTGGAGAGATTATGATGTGGCTCGCCTGA 960 0.4625 MSVENQGLNDLGFFWDSQPWILPNSDDLGLRETKEELHIETPPPTPTPTPTNHDLTPEETKKKEEELVADTAKNKKRSRADNRNGKRPMKNDGSDHDLHIWTERERRKKMRNMFASLHALLPQLPPKADKSSIVDEAVSYIKTLQKTVEDLEKKKQQRNQSVSVSPIACESAVTNPQWNPYDSSSSSKDNNALTITSNHQGSLNPSSSAAANNSAFLGPAREPAAFKTWASQNVVVNICGEEAQFSICAEKKPSLFTTIAFVLEKHKIDVISASILCNDNSNRYMVLAHASKALLQYADANTVEETFKLAAGEIMMWLA 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272478g00002 319 MobiDBLite consensus disorder prediction 175 208 - -
Stsc272478g00002 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 94 144 IPR011598 GO:0046983
Stsc272478g00002 319 Pfam Helix-loop-helix DNA-binding domain 102 145 IPR011598 GO:0046983
Stsc272478g00002 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 97 163 IPR036638 GO:0046983
Stsc272478g00002 319 Coils Coil 134 161 - -
Stsc272478g00002 319 Gene3D - 94 165 IPR036638 GO:0046983
Stsc272478g00002 319 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 50 318 IPR044278 GO:0003700|GO:0006355|GO:0009960
Stsc272478g00002 319 SMART finulus 102 150 IPR011598 GO:0046983
Stsc272478g00002 319 CDD bHLH_AtbHLH_like 99 152 IPR045239 -
Stsc272478g00002 319 MobiDBLite consensus disorder prediction 26 99 - -
Stsc272478g00002 319 MobiDBLite consensus disorder prediction 55 99 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272478g00002 6 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.119 1.22e-48 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc272478g00002 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272478g00002 - - adu:107469983 441.425