Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272478g00001 ATGCAAGGTCAAAGAAGGACAACTGGGTCATTCCCTTCTATTGTTGGTATGATGCAAGGGCCTAATTCTAGTAGCACTGATATGAATCATCAGTCTTCCTTGAATCACGTGCAAAATGCCGTAGATTTCCGGTTGTCAGATTATAGAGGGTCCACTGGCGAGACTGCATGTTTACGAGCCACTGGTCCCAATGTACAGAGTTTTAGTGGCTGGAATCCTGGTGAACCAAGTTCCAGACTGAATCTGGTCAACCAAGTGAATGATGAAGGTCTAAAGTCTGAACATGGTCCATCTTCATGCAGTGCTACTTCCGAGGATGGTCTCAGAATAGAGGAAAGGCCATTTGAACCAAATAGTATGATTTTTCCAGTTAGTTCAAATACTAATCTACATGGAAGTCATTCTAGAATCCAACCTTCTTTTTTGCAAGGATCCAGCTCCAGTCATATAACACAGAATGTTAATCTAGATATGGAGCACACAGCACAAGCTGCTAACCGTGGGAAAGGCATAGCAGCTAGTAGCAGTGTGAATCACAATGATAGTGGTGGATATGATAGAGAGCAAATGGCATTCAGCAGTGCTTCATATAATCGTCATACTGGAACTTCATCCGAAAACCCTGGATTCATGAGTTGGGGAAATAGTGGCAGTTCAAGTTCTTCTTTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCCCTTGAAGGTAGTTCTGGTCAACTGTGTACGGGAGGAAGCTCAAACTCTCTTTTACAATCCGAAAATGGGTGCTGGCCTACTAATCCTGTTGATCTTAATGTTTCGAGCAGTTTAAATGTTTCAATGCCCTTAGAGGATGTTCCTGTCACTCTTCCTCCACTACAGCTGAACTTGCGAAGTGAAGTGAGACAAGAAGCTTCTGATGCGTTTCCTATGATAAATGTCCAAGAAAATGTGGAAAGGCCAATCAGAAACTTTGATAGGAGAATGACCCATGTACAGCATCAGGAATCTGTACCTCTCAATTTACAATCAACCGGGAGTTCTAGGCATCATAATCATTCTTCTCCCCATCAAATACCCGGCTCCCATTCATTTAATGATTCTTTGGAATTGAGGTTAACACCTGGAGTAAATGCTGCCAATTCCGGTGCTCCTCAGAACCAGTCACCTCCCCTTCACATGCATCCTTTTCCTTGGAATAGAGCTGCTAATTCTAGAGGGGCTAGATCTTCGACTTCTCATAACTCTGCAGAAAGAGTTGTACAGGAAGATTTTAGTCTAAGAATTTTCCCAAGAGAGACTTCTGGACACCCGATGAATGTACCTGCACCCACAGTGCATGAACCAACACCTTGGCGTACCTCCTCTGCTAATGCAAACAGTTCTGGAGGTGTACCTACTACTTCTTGGATGGGATCTAGTCCAAACATCGTCCCATTACCTAATCCCAGCTGGATTGTTAACCCGGAAGTCCCTACAGAAAATCTGCAAAGATTGTCAGAGTTCAGTCCTTGGTCTCTTTTTCCATCAATTAGCTCAGCATCCAGTGTTCAGAATGGTCATTCAGCTCCATCTTCTTCTGGGTCTTCTTCTATAACTCAGGGGTCCCGCAACAATCAACCATATCTAAGAGCAGCATTGTTAATGGAAAGGAGGGGTGGTGATGTACTCTCTACTCCGCGAGCATTAACTGTTGACAATGAGGGGAGACGCCGACTAATATCTGAGATTCGCCAAGTCTTGATTGCAATGCGGAGGGGCGATAACTTAAGGGCCGAGGATTATATGCTTTTTGACCCTTTCATGTATCATGGGATGGCTGAACTACATGACAGGCACAGAGAAATGCGCCTTGATGTTGATAATATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGTATTGGAGATGTCAGCACGGGATTGAGTGAGGATCTCATTATGAAGTCAATGAAACAGCAAATATACATGTCTGTTATGACGGAGTCTTCTACGGATCTGGAGCCTTGCTGTATCTGTCAGGAGGATTATACTGAAGGAGAGAACGTTGGTTCGCTAGATTGTGGGCATGAATTCCACAGTAATTGCATCAAGCAATGGCTAATGCAGAAGAACCTTTGCCCCATTTGCAAAACAACAGGCTTAGCTACATGA 2139 0.4385 MQGQRRTTGSFPSIVGMMQGPNSSSTDMNHQSSLNHVQNAVDFRLSDYRGSTGETACLRATGPNVQSFSGWNPGEPSSRLNLVNQVNDEGLKSEHGPSSCSATSEDGLRIEERPFEPNSMIFPVSSNTNLHGSHSRIQPSFLQGSSSSHITQNVNLDMEHTAQAANRGKGIAASSSVNHNDSGGYDREQMAFSSASYNRHTGTSSENPGFMSWGNSGSSSSSLVNWGSSCKRKALEGSSGQLCTGGSSNSLLQSENGCWPTNPVDLNVSSSLNVSMPLEDVPVTLPPLQLNLRSEVRQEASDAFPMINVQENVERPIRNFDRRMTHVQHQESVPLNLQSTGSSRHHNHSSPHQIPGSHSFNDSLELRLTPGVNAANSGAPQNQSPPLHMHPFPWNRAANSRGARSSTSHNSAERVVQEDFSLRIFPRETSGHPMNVPAPTVHEPTPWRTSSANANSSGGVPTTSWMGSSPNIVPLPNPSWIVNPEVPTENLQRLSEFSPWSLFPSISSASSVQNGHSAPSSSGSSSITQGSRNNQPYLRAALLMERRGGDVLSTPRALTVDNEGRRRLISEIRQVLIAMRRGDNLRAEDYMLFDPFMYHGMAELHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDLIMKSMKQQIYMSVMTESSTDLEPCCICQEDYTEGENVGSLDCGHEFHSNCIKQWLMQKNLCPICKTTGLAT 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272478g00001 712 ProSiteProfiles Zinc finger RING-type profile. 665 706 IPR001841 -
Stsc272478g00001 712 MobiDBLite consensus disorder prediction 399 415 - -
Stsc272478g00001 712 MobiDBLite consensus disorder prediction 1 32 - -
Stsc272478g00001 712 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 213 710 IPR045191 GO:0061630
Stsc272478g00001 712 MobiDBLite consensus disorder prediction 444 470 - -
Stsc272478g00001 712 FunFam E3 ubiquitin-protein ligase MBR2 632 710 - -
Stsc272478g00001 712 SMART ring_2 665 705 IPR001841 -
Stsc272478g00001 712 MobiDBLite consensus disorder prediction 508 532 - -
Stsc272478g00001 712 MobiDBLite consensus disorder prediction 337 366 - -
Stsc272478g00001 712 MobiDBLite consensus disorder prediction 337 415 - -
Stsc272478g00001 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 630 709 IPR013083 -
Stsc272478g00001 712 MobiDBLite consensus disorder prediction 168 187 - -
Stsc272478g00001 712 MobiDBLite consensus disorder prediction 165 187 - -
Stsc272478g00001 712 MobiDBLite consensus disorder prediction 443 470 - -
Stsc272478g00001 712 Pfam Ring finger domain 665 706 IPR001841 -
Stsc272478g00001 712 SUPERFAMILY RING/U-box 643 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272478g00001 Stsc-Chr272478 8471 13857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272478g00001 18 712 C3H Transcription Factor Family AT2G15530 36.721 4.78e-114 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272478g00001 - K19041 gmx:100809024 1073.15