Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272475g00001 ATGGGGTGTTGTGTCTCAACCAGTAGTAAGAGTACCTGTAGCAGCCGGAGCAATGGAGAGATGGCGGCGAATCCGTCTTGCTTCGAAATCGGATGCTGTGTTCATAAGAAAGCAAGGAGAACTTTCTCAGATCATGTTATTTCATTACACCATTTGGCATCACTGCCTAGTAGGATTTTCACCAATGGAAAGAGCAGGGCTTCTTGCATATTTACGCAGCAGGGCCGAAAGGGAATCAATCAGGATGCAATGATTGTGTGGGAAGATTTTATGTCTGAAGATATGACCTTTTGTGGTGTCTTCGATGGCCATGGTCCCCATGGTCATCTCGTTGCGCGAAAAGTGAGGGATACCTTGCCTTTGAAGCTTCTCTCGTTTCTGCATTCTTCTGAATCGAGGCGAAACGGATCAGGTAAAGGTAAAGCTTGCTTCAAGGGGAACATAAAACCGGAAAATGGAGACTCTCAGAAGGATTTATCGGCCGAGGATAAACTGAATTCAACATGGAGAGAGGCTTTCATGAAGGCATACAAGTCTATGGACAAAGAGCTCAGGTCTCATCCGAATTTGGACTGCTTTTGCAGCGGGAGCACGGCTGTCACAATAGTGAAGCAGGGCTCGAATTTGTTCATGGGATATATCGGTGATTCTCGAGCAGTGATGGGATCCAAGGACAGCAATGACTCCATGGTGGCAATTCAGTTGACAGTCGATTTGAAGCCGGATTTGCCAAGAGAAGCAGAAAGAATTAAACGGTGCAAGGGAAGGGTGTTTGCTTTGCAAGATGAGCCTGAGGTGCCAAGGGTATGGCTGCCTTTCGATGATGCACCGGGATTAGCAATGGCTAGAGCATTCGGAGATTTCTGCTTGAAGGAGTATGGTGTGATTTCCACACCTGAATTTTCTCATCGGCTGCTTACTGATAAAGATCAATTTATTGTTCTTGCCTCAGATGGGGTTTGGGATGTTTTAAGCAATGAAGAGGTAGTTGAGATAGTATCTTTGGCACCAACACGGTCATCGGCCGCAAGGATTCTGGTAGATGCTGCAGCCCGGGAGTGGAAACTTAAGTATCCGACTTCAAAGATGGACGACTGCGCTGTGGTCTGCCTATTTCTGGACGGTAAAATGGACTCGGAATCCGATTATGACGAACAAGGCTTCTCTTCTGCAACCCTCCAGAGCAACCATTCTGGAAATCCGGCCGAGTCAGATGACGGACAAAAGTCCGAGCCGTCTTTGCAGAGGAACTTCACAGTTAGATCCTCAGAGGAAAATGAGACTAATAATGTTGTACAGTCCATTGATGTTGAAGATGGAACATCATCAGCTGATGATCAAAATTGGTCAGGTTTGGAGGGTGTTACTCGTGTGAACTCATTGGTCCAACTACCTAGATTCTCAGAGGAAAGGCCAAAATCATGA 1425 0.4639 MGCCVSTSSKSTCSSRSNGEMAANPSCFEIGCCVHKKARRTFSDHVISLHHLASLPSRIFTNGKSRASCIFTQQGRKGINQDAMIVWEDFMSEDMTFCGVFDGHGPHGHLVARKVRDTLPLKLLSFLHSSESRRNGSGKGKACFKGNIKPENGDSQKDLSAEDKLNSTWREAFMKAYKSMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAVMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISTPEFSHRLLTDKDQFIVLASDGVWDVLSNEEVVEIVSLAPTRSSAARILVDAAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDYDEQGFSSATLQSNHSGNPAESDDGQKSEPSLQRNFTVRSSEENETNNVVQSIDVEDGTSSADDQNWSGLEGVTRVNSLVQLPRFSEERPKS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272475g00001 474 MobiDBLite consensus disorder prediction 1 21 - -
Stsc272475g00001 474 Pfam Protein phosphatase 2C 145 347 IPR001932 -
Stsc272475g00001 474 ProSiteProfiles PPM-type phosphatase domain profile. 67 373 IPR001932 -
Stsc272475g00001 474 SMART PP2C_4 56 371 IPR001932 -
Stsc272475g00001 474 SUPERFAMILY PP2C-like 59 375 IPR036457 -
Stsc272475g00001 474 PANTHER PROTEIN PHOSPHATASE 67 371 IPR015655 GO:0004722|GO:0006470
Stsc272475g00001 474 MobiDBLite consensus disorder prediction 383 452 - -
Stsc272475g00001 474 CDD PP2Cc 73 373 IPR001932 -
Stsc272475g00001 474 MobiDBLite consensus disorder prediction 131 160 - -
Stsc272475g00001 474 Gene3D - 59 381 IPR036457 -
Stsc272475g00001 474 MobiDBLite consensus disorder prediction 384 452 - -
Stsc272475g00001 474 FunFam probable protein phosphatase 2C 52 58 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272475g00001 Stsc-Chr272475 10228 13722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272475g00001 1 474 PP2C-type Phosphatase Gene Family AT1G03590 67.917 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272475g00001 - - adu:107477895 903.664