Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272474g00003 ATGGCAAAAACACTGCTCCTTCTTTTTGCCCTCTTAACTCTGTTCTCAAGAATAACTCACCAACAAGAGCTCTTCTTTGAAGGCTTCAATGGCGGTGAAGCCGCCGCAAACATGTCCCTAAACGGCGGCGCAGTCATTCACCAAGGCGGAACACTTGGTTTAACAAACGACACTAAGAGGGTACTTGGTCACGCGTTTTACTCCACCCCAATCCAATTCAAGAACAAGAGCAAAGTTGTCTCCTTTTCCACGGCATTTGCATTCGCAATAGTCCCTCAGTACCCAACACTTGGTGGCCATGGCTTCGCCTTCACCATTTCTCCCTCCAAGGACCTTCCCAACGGTTACCCAAGCCAGTACATGGGCCTCCTGGGCCCAAAAAACGTCGGCAACTTCTCCAACCACCTCTTCGCCGTGGAGTTCGACACCGTCCAAGACTTCGAGTTCGGAGACATCAATGACAACCATGTCGGCATTAACCTCAACAACATGGCCTCCAACAAATCCGTTAAAGCAACGCTGAACTTGAAGAGTGGCAAAGTGATTCAAGCATGGGTTGATTACCACTCCTCAAAGAACCAATTGGAGGTTCGTCTCTCCCAAACCTCAACAAAACCCAATTCTCCTATCTTGTCCTACGAGGTTGATCTCTCACCCATTCTCCAACACTCCATGTACGTTGGGTTCTCCTCTTCAACAGGGCTGCTAGCTAGCTCTCACTATATCTTGGGCTGGAGCTTCAACATCAACAACAACAATGGAGACTACGCCAAAACCCTCTCCTTAAAGAACCTCCCTCCACTCCCTTCACGGGACAAACCCCATAGAAGGGCCTTAATCTTAGGGCTCTCTCTTTCAGCTTCGATATTCCTCCTCTGCTCCATTGCCGTACCATTCTACCTCATCAGAAAGCTGAGAAACGCAGAAGTAATCGAACCTTGGGAGCTAGAAGTTGGTCCACACAGGTTCCGCTACAAGGAACTGAAGAAAGCTACTAGAAACTTTCACCACAAGAACATGCTCGGCTTCGGGGGATTCGGCGCGGTTTTCAAGGGAACACTGGAAAGCAACACAGAAATCGCAGTGAAGCGAGTCTCCCATGACTCCAAACAGGGATTCCAAGAATTCGTATCGGAAATCGAGACCATAGGCAGGTTGCGCCACAGGAACCTCGTACAGCTGCTAGGTTGGTGCAGAAACCGTGCGGATCTTCTATTAGTGTACGACTTCATGCCAAACGGAAGCTTGGACAAGCACCTATTCGAAGATTCAGCAAGAAAAACGCTAACATGGGAACAGAGGTTCAAGATTGTGAAGGGTGTGGCTAGCGGACTCTTGTACCTTCATGAGGAATGGGAACAGACGGTGATTCACAGGGATATTAAAGCAGGAAACGTTCTATTGGACGGTGACATGAACGCGCGCCTCGGCGACTTTGGTTTGGCCAAGCTATACGACCGTGGTTCCAACCCCAGCACCACGAGGGTTGTAGGGACGCTGGGGTATCTTGCGCCGGAGCTGACCAAGACGGGGAGGCCAAGCACGTCTTCCGATGTTTATGCGTTTGGGGCGCTGCTGTTGGAGGTGGTGTGCGGGAGGAGGCCCGTGGAGGCGAAGGCCATGCCGGAGGAGCTTCTTCTTGTGGAGTGGGTGTGGGAGCGGTGGCGCGTGGGGGCGGTGTTGGAGGTGCTGGACTCCAAGCTTGGGGGAATTTATGATGTGGTGGAGGTTGTGGTGGTTATTAAGTTGGGGTTGTTGTGTTCGTGTGAAGTTCCGGAAATGAGGCCAAGTATGAGGCAGGTTGTGAGGTTCTTGGAAGGGGAGGTCCCGTTGCCGGAGGTGATTCCGCCTCCGGATGGCTTTGGTGCTGGAAAGGGTGTCGGTACTGCTTATGGCGGGAACACGTGGCTGTCGGCGGTTGATGATGACGTGGAGGATGGATCCGGTTTGTCTGTTTTGCTTTCTGGTACAGGGGATGAGGGTAGGTAA 1989 0.5173 MAKTLLLLFALLTLFSRITHQQELFFEGFNGGEAAANMSLNGGAVIHQGGTLGLTNDTKRVLGHAFYSTPIQFKNKSKVVSFSTAFAFAIVPQYPTLGGHGFAFTISPSKDLPNGYPSQYMGLLGPKNVGNFSNHLFAVEFDTVQDFEFGDINDNHVGINLNNMASNKSVKATLNLKSGKVIQAWVDYHSSKNQLEVRLSQTSTKPNSPILSYEVDLSPILQHSMYVGFSSSTGLLASSHYILGWSFNINNNNGDYAKTLSLKNLPPLPSRDKPHRRALILGLSLSASIFLLCSIAVPFYLIRKLRNAEVIEPWELEVGPHRFRYKELKKATRNFHHKNMLGFGGFGAVFKGTLESNTEIAVKRVSHDSKQGFQEFVSEIETIGRLRHRNLVQLLGWCRNRADLLLVYDFMPNGSLDKHLFEDSARKTLTWEQRFKIVKGVASGLLYLHEEWEQTVIHRDIKAGNVLLDGDMNARLGDFGLAKLYDRGSNPSTTRVVGTLGYLAPELTKTGRPSTSSDVYAFGALLLEVVCGRRPVEAKAMPEELLLVEWVWERWRVGAVLEVLDSKLGGIYDVVEVVVVIKLGLLCSCEVPEMRPSMRQVVRFLEGEVPLPEVIPPPDGFGAGKGVGTAYGGNTWLSAVDDDVEDGSGLSVLLSGTGDEGR 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272474g00003 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Stsc272474g00003 662 CDD STKc_IRAK 341 607 - -
Stsc272474g00003 662 FunFam serine/threonine-protein kinase PBS1-like 303 410 - -
Stsc272474g00003 662 FunFam L-type lectin-domain containing receptor kinase S.4 20 255 - -
Stsc272474g00003 662 PANTHER - 17 612 - -
Stsc272474g00003 662 Gene3D Transferase(Phosphotransferase) domain 1 411 615 - -
Stsc272474g00003 662 CDD lectin_legume_LecRK_Arcelin_ConA 26 250 IPR001220 GO:0030246
Stsc272474g00003 662 Pfam Legume lectin domain 25 253 IPR001220 GO:0030246
Stsc272474g00003 662 SMART serkin_6 335 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272474g00003 662 Gene3D Phosphorylase Kinase; domain 1 320 410 - -
Stsc272474g00003 662 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Stsc272474g00003 662 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 250 IPR013320 -
Stsc272474g00003 662 FunFam L-type lectin-domain containing receptor kinase S.4 411 617 - -
Stsc272474g00003 662 SUPERFAMILY Protein kinase-like (PK-like) 317 617 IPR011009 -
Stsc272474g00003 662 Gene3D - 23 250 - -
Stsc272474g00003 662 Pfam Protein kinase domain 335 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272474g00003 662 ProSiteProfiles Protein kinase domain profile. 335 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272474g00003 Stsc-Chr272474 21369 23357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272474g00003 22 623 Receptor kinase-like Gene Family AT3G55550 58.966 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc272474g00003 Pkinase 6.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272474g00003 - - adu:107480854 1130.93