Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272471g00001 ATGGGTTTGAGGGAAAACTACTGTAATAATGATATTCATGTAGAGGAAAAGAATTTATACTACTGTCACAGCAGTAATATTAACCCAAGTTTCATTGAGTGGCTCAAACCATCTTCATCTCTAACAACTAATCCTACTCCTTCTGATGAACACCCAGAAACTATTGAGTTTTTTCCCATTTTAAAGGCTTCAGAGGAAGAACATGGAGTGGGGAATAATCATCATCATGAGGTGAAAGAAGAGAAGGTGGAACAACAACAACAACAGTTGATGACTACTACTGTGGCTTTGCACATTGGATTACCAACAAACAACACAGTAGGAGTTCTTTCTGCTGCTGCTGCTGATGATGGTGAGAAGAAGAAGGTTTATCATGTTAAGGAGGAAGAAGAAGAAGAAAAGTTATTGTTGGAGAAGTGGTGGTTAAAGGAGGAAGAGAAGAGGTTTTGGATACCAAGTCCTTCACAAATCCTTGTTGGGCCTATGCAATTTGCTTGCTCCATTTGCAGCAAAACTTTCAATAGATATAACAATATGCAGATGCATATGTGGGGACATGGTTCGGAATTCAGGAAGGGACCAGACTCACTGAGAGGAACACAACCTGCGGCAATGCTAAGGCTACCATGTTATTGCTGTGCACATGGTTGCAAGAACAACATCAACCATCCAAGGGCAAAGCCCTTGAAGGATTTCAGAACCCTCCAAACCCACTACAAGAGGAAGCATGGCAGCAAGCCATTCATGTGCAGAAAGTGTGGCAAAACATTTGCTGTTAAAGGTGATTGGAGGACTCACGAGAAGAACTGTGGTAAGCTTTGGTATTGCACTTGTGGTTCTGATTTCAAGCATAAGAGGTCCCTTAAGGATCATATTAGATCCTTTGGTAATGGTCACTCCCCTCATCCTTCTCTTGAAGGTTTTCATCATGACAAAGAATGCACTACCACCACTACTACTGCCTCTGATGATGATCATCATCAATTCAACTAG 993 0.4149 MGLRENYCNNDIHVEEKNLYYCHSSNINPSFIEWLKPSSSLTTNPTPSDEHPETIEFFPILKASEEEHGVGNNHHHEVKEEKVEQQQQQLMTTTVALHIGLPTNNTVGVLSAAAADDGEKKKVYHVKEEEEEEKLLLEKWWLKEEEKRFWIPSPSQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGNGHSPHPSLEGFHHDKECTTTTTTASDDDHHQFN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272471g00001 330 SUPERFAMILY beta-beta-alpha zinc fingers 147 187 IPR036236 -
Stsc272471g00001 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 191 IPR013087 -
Stsc272471g00001 330 SMART c2h2final6 164 186 IPR013087 -
Stsc272471g00001 330 SMART c2h2final6 211 243 IPR013087 -
Stsc272471g00001 330 SMART c2h2final6 248 268 IPR013087 -
Stsc272471g00001 330 FunFam Zinc finger protein WIP2 217 299 - -
Stsc272471g00001 330 SUPERFAMILY beta-beta-alpha zinc fingers 234 268 IPR036236 -
Stsc272471g00001 330 PANTHER ZINC FINGER PROTEIN WIP2 22 325 IPR043584 GO:0003700|GO:0010468
Stsc272471g00001 330 Gene3D Classic Zinc Finger 244 304 - -
Stsc272471g00001 330 Gene3D Classic Zinc Finger 163 186 - -
Stsc272471g00001 330 ProSitePatterns Zinc finger C2H2 type domain signature. 166 186 IPR013087 -
Stsc272471g00001 330 ProSiteProfiles Zinc finger C2H2 type domain profile. 248 268 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272471g00001 Stsc-Chr272471 5041 8941 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272471g00001 28 317 C2H2 Transcription Factor Family AT1G08290 55.556 1.03e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc272471g00001 zf-C2H2_6 0.00015 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272471g00001 - - ahf:112706908 469.929