Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272470g00004 ATGGCTTCATCGTTTCAAGAAGCAGAACAAGACGACGGAGTAACCACCGACCCCAGCACCAGCGACGCCCACACAAACACAAAGCCCGCCAGACGCGCTTCCAGCAAGGATCGCCACACAAAAGTCGAAGGTCGTGGGCGAAGGATCCGATTACCTGCCACGTGCGCTGCACGGATCTTCCAGCTGACACGTGAGCTTGGCCACAAGTCAGACGGCGAGACCGTACGCTGGCTTCTTCAACACGCCGAGCACGCCATTATTGAAGCCACCGGAACCGGTACCGTACCCGCCATTGCCGTTTCCGTCGGCGGCACACTCAAGATCCCAACCCCTTCCAACGATAGCACCTCCTCCGCCGCCGGCGCAAAGAAGCGGAAACGCCCTTCTAGCAGCGAGTTTGTGGACTTAAGCACCGACACCGTTTCGCAGTTGTCCGGTTTAGCGCCGATTCAACCCGCAGTTCCGCAGGGTTTAGTTCCGGTTTGGACGGTCGGGAACGCGAGCATGGTGGTCCCCCCAAACGCGTTCTGGATGATTCAGCCACAGGCTTCGGCGGCGGCTGCTCCAGTAGTGGGTGGTTCGTCTAATCAGCAAGTGGCGAAGAAGTCAAAGTTGGCGGCGAGTGTTAGTTCTGGTGGCGGTGGTAATAGTCCTGACGGGAAGGGTCAGATGTTAAGGGAATTGCAATTGATGGCAACAAGTCACCGCTCTTCCAAACAATGA 723 0.5754 MASSFQEAEQDDGVTTDPSTSDAHTNTKPARRASSKDRHTKVEGRGRRIRLPATCAARIFQLTRELGHKSDGETVRWLLQHAEHAIIEATGTGTVPAIAVSVGGTLKIPTPSNDSTSSAAGAKKRKRPSSSEFVDLSTDTVSQLSGLAPIQPAVPQGLVPVWTVGNASMVVPPNAFWMIQPQASAAAAPVVGGSSNQQVAKKSKLAASVSSGGGGNSPDGKGQMLRELQLMATSHRSSKQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272470g00004 240 MobiDBLite consensus disorder prediction 106 124 - -
Stsc272470g00004 240 Pfam TCP family transcription factor 34 107 IPR017887 -
Stsc272470g00004 240 MobiDBLite consensus disorder prediction 29 48 - -
Stsc272470g00004 240 MobiDBLite consensus disorder prediction 106 134 - -
Stsc272470g00004 240 ProSiteProfiles TCP domain profile. 35 89 IPR017887 -
Stsc272470g00004 240 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 23 220 IPR005333 GO:0003700
Stsc272470g00004 240 MobiDBLite consensus disorder prediction 202 217 - -
Stsc272470g00004 240 MobiDBLite consensus disorder prediction 1 48 - -
Stsc272470g00004 240 MobiDBLite consensus disorder prediction 202 240 - -
Stsc272470g00004 240 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272470g00004 Stsc-Chr272470 27325 28047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272470g00004 29 197 TCP Transcription Factor Family AT2G45680 56.614 3.99e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc272470g00004 TCP 4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272470g00004 - - mdm:103444756 244.202