Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272468g00002 ATGGCAGATCAGAGAGTAAAGGTAAATTCAACTAGTAATCACGCTTTCTGGGTTGACAAATCAGAGGCATTATTTCTGTTGTGCACGAGGTTACAGATGGGGACTGAACTCATGAGAATATGTGTTAAAGAAGATAATGATGAGTTTCCTTCAGTTCCACCTGCATCTACAAGTGCTTCTGAATCACATTCGACACAGGTGGTTACCAATATTCAAGTTAATGATAGTTCAAAAGTTCCTAGGACGCTCAGACGAAGACCTTGGATTAATTATGGACAATATGAAAATTGTTGTGACGAAGTCCCTGATTGTGAGCGGCTTGATCAAAATTTCTCCTCAAGACCTTGTCTTCCCAGGGGTGTTATCCGTGGATGTCCAGATTGCATTAATTGCCAGAAGGTTGTTGCAAGATGGCGACCAGAAGATGCTCGTAGGCCAAAGCTTGAGGATGCTCCTGTTTTCTACCCTACAAAAGAGGAGTTTCAAGATACTTTAAGATATATATCAAGCATTCGCTCCAGTGCTGAACCATATGGAATTTGTCGCATTGTTCCCCCTTCTTCTTGGAAACCCCCTTGTCCTCTCAAAGAAAAAAATATATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAGAGGGTTGACAAACTTCAGAATCGTCAGTCAGTGAGAAAGGTGTCAAGGTTTCAAAGCAATATGAAAAGAAAAAGGAGAAGGGTCACGAGAATGGGAATGGAAAATGGCACCATCGGAGCACTGGACGTGGGACTTTGTGAAGCTGAAAGTTTTGGGTTTGAACCTGGTCCACAATTTACCTTGGAAACATTTCAGAGATATGCTGATGATTTCAAGGACAAATACTTCAGAGAAAATGAGAATGTGTCTCATTTGGGAACCAATACAACAATTTTAAATAGCACCTTTGAGCCTTCTGTGGAGAACATTGAGGGTGAATATTGGCGGGTGGTTGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGGTTTTTGGGAGTGGTTTTCCTAGAAATTCTAGTAATGTTGGTTCAACGTCACATGAAGATTATATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGTTACCTGGATCCTTGCTTTGTTATGAAAGCGGCGATATATCTGGTGTTCTAGTGCCATGGTTGTACATAGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAAGACCACCATTTATATTCCTTGAATTATATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTCCCTGGTAAAGATGCTTGCAAATTGGAAGAGGCCATGAGGAAGCATTTACCGGAACTTTTTGAAGAACAGCCTGACTTGCTTCATAAGCTGGTCACTCAACTTTCTCCTTCCATCCTTAAGTCTATGGGAGTGCCAGTTTATAGGTGTGTTCAAAACCCGGGAGAATTTGTTCTGACATTTCCTCGAGCCTATCACTCTGGCTTCAATTGTGGCTTCAACATTGCAGAGGCTGTTAATGTTGCTCCAGTTGACTGGCTGCCCCATGGGCATATTGCCATAGATCTGTATAAGGAGCAGCGACGCAAGACTTCTATATCCCACGATAAGCTATTACTGGGGGCTGCAAGGGAAGCTGTAAGAGCCCAGTGGGAGCTTAATTTGCTAAAAAGGAATACTTCTGATAACCTACGATGGAAAGATGTCTGTGGAAAGGATGGTCTTTTAGCGACTGCACTCAAGACACGTGTTGAGATGGAGCGAGTCAGAAGGGATTTTCTATGTAATTCTTCACAAGCATTAAAAATGGAGAGTAACTTTGATGCGACAAGTGAAAGGGAATGCAGCATTTGCTTTTTTGACTTACATTTATCCGCAGCTGGTTGTCGATGTTCCCCAGATAGATATGCTTGCTTGGATCATGCAAAGCAGTTTTGTTCATGCACTTGGGATTCCAAATTCTTCCTCTTTCGCTATGATATTAGTGAATTAAATATTCTTGTTGAGGCATTGGAAGGAAAACTGAGTGCTGTATACAGATGGGCAAAATTAGATCTCGGGCTTGCACTGACTTCTTATATTTCAGGAGACAAGGAAAAAGTACTCAAGGAATTGAGATTTCAGTCATCAAACTTGTCTCATTCTTCCATGTCCAATGCGCATAAAGAGATGACTTTGCATCAATCAAATGAATTTGTTGAAGATACTCAGTTAATGGATACCCCAATCGTGGATCAATCAAATTCAGAAAAGGGCAAAGATCAGAGCTTCCCTCAGCAGAGAAAATCCGTAGAAGTTGTGTCTCCTTTGAGTCAGAAGAAGGAACGTTCAACACTTGATAATATACAACCTGCAAATGAGATGGGTAATCATAAGACTTTTGTTAATAAAGAAGGATCTGCTAATTGCAGAATAAAGCTGAGTCGCCTAGGTTGCCAAACATCTCAAGAGGATTTGTCATTTGTTCTATGTCTTCCTGTGGCTCAAGCTGAGCATGGAGGAGGGAAAAATTTAATACACAGACCTAACACTGGTAGTATACAGCTTAGTGAAGATAAAGTTGATGAGGTGAAGCCAGATACCAATGGACGGAAGGAGGTTTCTCATATTGATAAAGGAAATTCATGTAATAATGTGGAAAATACAAAGTTAATCATCCGCATGAAAGATCCTACTGTTATGGGTAACAAGGAAGCTATTGCATTTCCCCAAGCGAATAAGAGTTCTGATTCAACTCGGCTTTTGCATGTTAAACAGGAATGCCAAGAAAACAGGGAACCAGCAATAGCTTCTACCCCAATAGATCTTTCTTGTCAAGATGGTCTTACTGCCACAGAATCAGTTAAAAGTATTCCAGATTCTTTAACTGTAGATGCCAACAACCGGTGCCAGGAAAGTGCTTCGAGTTCTTTAAATCCACAACATTCTGTCCCCATCAAGGTTAATAATGAGGATAATCACGAAAAGCTTGGAGGGTGTGTCACTTCTAGTGTAGCTGAGAGTGTAAGAGCTGTTAATGGAAACACATGTGGTCTAAACAATTACCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTCCGGCGTATCAACTGCAACGTTGAGCCTTTAGAATTTGGAGTTGTGCTTTCTGGAAAGTCATGGTGCAGCAGTCAGGCTATATTTCCTAAGGGATTTAGAAGCCGTGTTAGATACATAAATGTCTTAGACCCCTCGAATATGTGCTATTACATTTCAGAAATTCTTGATGCTGGACGCAACAGGCCTCTATTTATGGTTACCTTGGAAAATTGTCCAAATGAGGTCTTCGTACATATTTCAGCTGTAAGATGCTGGGAACTAGTAAGAGAGAGAGTTAACCAAGAGATTGCAAAACAACATAAGCTGGGAAGGAATGGTCTTCCTCCTTTACAGCCTCCCGGAAGTCTTGATGGCTTTGAAATGTTTGGATTTTCTTCACCAGCCATAGTGCAGGCTATTGAGGCACTGGATAGAAGTCGAGTCTGTAGTGAATACTGGGATTCTCGGCCGTACTCCCGGCCTCAAGGGCAAATTTCACAACCTCGGCAAACCAATTCAAATGGTGGAAATGGTCAAGGGGTTCTCGTGAATCAGCAATTGCCCAATGGAGGTGTTGCAGCATTACAGAGCCTATTTAGAAAGGCCAATGCTGAAGAATTGAACTCCCTGTACAGCATTTTTAGTGACAAGCCAGAGGCTGACCGGAACCTAATTGCGCGACTTCTAAATGAAGAGATTCAGAAATCCCAACCGTCTTAG 3780 0.4169 MADQRVKVNSTSNHAFWVDKSEALFLLCTRLQMGTELMRICVKEDNDEFPSVPPASTSASESHSTQVVTNIQVNDSSKVPRTLRRRPWINYGQYENCCDEVPDCERLDQNFSSRPCLPRGVIRGCPDCINCQKVVARWRPEDARRPKLEDAPVFYPTKEEFQDTLRYISSIRSSAEPYGICRIVPPSSWKPPCPLKEKNIWEGSKFATRVQRVDKLQNRQSVRKVSRFQSNMKRKRRRVTRMGMENGTIGALDVGLCEAESFGFEPGPQFTLETFQRYADDFKDKYFRENENVSHLGTNTTILNSTFEPSVENIEGEYWRVVESPTEEIEVLYGADLETGVFGSGFPRNSSNVGSTSHEDYIKSGWNLNNFARLPGSLLCYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPGKDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSMGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNIAEAVNVAPVDWLPHGHIAIDLYKEQRRKTSISHDKLLLGAAREAVRAQWELNLLKRNTSDNLRWKDVCGKDGLLATALKTRVEMERVRRDFLCNSSQALKMESNFDATSERECSICFFDLHLSAAGCRCSPDRYACLDHAKQFCSCTWDSKFFLFRYDISELNILVEALEGKLSAVYRWAKLDLGLALTSYISGDKEKVLKELRFQSSNLSHSSMSNAHKEMTLHQSNEFVEDTQLMDTPIVDQSNSEKGKDQSFPQQRKSVEVVSPLSQKKERSTLDNIQPANEMGNHKTFVNKEGSANCRIKLSRLGCQTSQEDLSFVLCLPVAQAEHGGGKNLIHRPNTGSIQLSEDKVDEVKPDTNGRKEVSHIDKGNSCNNVENTKLIIRMKDPTVMGNKEAIAFPQANKSSDSTRLLHVKQECQENREPAIASTPIDLSCQDGLTATESVKSIPDSLTVDANNRCQESASSSLNPQHSVPIKVNNEDNHEKLGGCVTSSVAESVRAVNGNTCGLNNYRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINVLDPSNMCYYISEILDAGRNRPLFMVTLENCPNEVFVHISAVRCWELVRERVNQEIAKQHKLGRNGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDRSRVCSEYWDSRPYSRPQGQISQPRQTNSNGGNGQGVLVNQQLPNGGVAALQSLFRKANAEELNSLYSIFSDKPEADRNLIARLLNEEIQKSQPS 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272468g00002 1259 PANTHER LYSINE-SPECIFIC DEMETHYLASE 144 1132 - -
Stsc272468g00002 1259 SMART cupin_9 363 526 IPR003347 -
Stsc272468g00002 1259 SUPERFAMILY Clavaminate synthase-like 360 553 - -
Stsc272468g00002 1259 ProSiteProfiles JmjC domain profile. 363 526 IPR003347 -
Stsc272468g00002 1259 Pfam jmjN domain 152 185 IPR003349 -
Stsc272468g00002 1259 ProSiteProfiles JmjN domain profile. 151 192 IPR003349 -
Stsc272468g00002 1259 Pfam JmjC domain, hydroxylase 393 509 IPR003347 -
Stsc272468g00002 1259 ProSiteProfiles FYR domain FYRC motif profile. 1086 1176 IPR003889 GO:0005634
Stsc272468g00002 1259 SMART fyrc_3 1090 1184 IPR003889 GO:0005634
Stsc272468g00002 1259 SMART fyrn_3 1040 1084 IPR003888 GO:0005634
Stsc272468g00002 1259 Gene3D Cupin 136 510 - -
Stsc272468g00002 1259 SMART JmjN_1 150 191 IPR003349 -
Stsc272468g00002 1259 Pfam F/Y-rich N-terminus 1039 1081 IPR003888 GO:0005634
Stsc272468g00002 1259 MobiDBLite consensus disorder prediction 745 777 - -
Stsc272468g00002 1259 Gene3D - 1033 1170 - -
Stsc272468g00002 1259 Pfam F/Y rich C-terminus 1088 1172 IPR003889 GO:0005634
Stsc272468g00002 1259 MobiDBLite consensus disorder prediction 1177 1200 - -
Stsc272468g00002 1259 Pfam C5HC2 zinc finger 616 666 IPR004198 -
Stsc272468g00002 1259 FunFam Putative lysine-specific demethylase JMJ16 1032 1170 - -
Stsc272468g00002 1259 ProSiteProfiles FYR domain FYRN motif profile. 1026 1084 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272468g00002 Stsc-Chr272468 8552 17204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272468g00002 33 1254 JUMONJI Transcription Factor Family AT1G08620 54.595 0.0 1231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc272468g00002 JmjC 5.2e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272468g00002 K11446 - gmx:100800271 1917.12