Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272467g00003 ATGGTGCTAGGTTGGAGTAGAAGGAGAAATCACAAGAAGGCTAATAATAAGAATGGAAAACCAAACATGGAGCTTGTGATTCCAAACCATTTCAGGTGCCCAATTTCCTTAGACCTGATGAAAGATCCTGTCACATTATCAACCGGCATAACATACGACAGACAAAGCATTGAAACATGGTTTGATGATGGAAACTTCACTTGCCCTGTCACAAACCAGATTGTCAAGAACTTTGACATGATCCCAAACCATTCCCTCAGGATGATGATCCAAGATTGGTGTGTGGAGAATAGGCAGCATGGTGTTGAGAGGATCCCAACACCAAGGATCCCAATTAGCCCCACCGATGTCTCGAATCTTCTGCTGCAAGTTAAGGAATCTTCGCGGCGATTGGATCGGCTTACTTGCCTTGATTTGGTTCAGAAGATGGAGAGATGGGGTGCTGAGAGTGAAAGGAACAAGAGAATCATAGTTGATAATGGAGCTCCAGCTTCATTGGCCTCAGCATTTGATGCATTTGCAGGTGATTCGGTTGAGAAGAATGTGGGTGTTCTTGATGAGATCCTTTCAGCACTGAAATGGATGTTCCCACTTCAATTGGAGGCTCAGAAATCATTGGGGTCTCATGCATCATTGAGCTGCATGGTTTGGTTCTTGAAGCACCAAGACCTACCTGGTAAAGAAAAATCCATTGCTGCATTGAAGGAGCTTCTGTCCTTTGGTGACAAGAACAATGTTGAGGCACTTTCACAGATTGAAGGGGTCAACGAGCTCTTGGTAGAATTGGTCAACAAGAGAATTAGTCCAACAATCACAAAGAATTCACTCAGGGTAATCTGGCACATGGTTTCATCATCAGAATCTGAATGTGGTGAGAAGATGAAGATCTCATTTGTGGAATTGGGATTTTTGAATACCCTTTTGGGGATCCTAATTGATTCAGAAAAGAGCATTTGTGAGAAGGCTTTGGCAATCTTTGATTGTCTTTGCAGCTGTGAGAAAGGGAGAGAGAGTGCTTTTGGGAATGATCTAACTGTTCCTGTTCTGGTGAAGAAGGTTCTGAGGATCTCTTCACTCAGCACTGATTATTCTGTGTCTGCAATATGGAAGATGTGTAAATTTGGTGAAGAAGAAGAAGAAGGGAAGGTTCTTGTTGAGGCTCTTCAAGTTGGTGCATTCCAGAAGCTTCTTCTGGTTTTGCAGGTTGGTTGTGGGGATTCCACAAAGGAGAAAGCCACTGAGCTTCTCAAGATGATGAATCCTTACAGGGCTGAATTGGTGGAATGCATCGATTCTGATTTCAAGAATCTCAAGAGATCCTTCTAA 1326 0.4314 MVLGWSRRRNHKKANNKNGKPNMELVIPNHFRCPISLDLMKDPVTLSTGITYDRQSIETWFDDGNFTCPVTNQIVKNFDMIPNHSLRMMIQDWCVENRQHGVERIPTPRIPISPTDVSNLLLQVKESSRRLDRLTCLDLVQKMERWGAESERNKRIIVDNGAPASLASAFDAFAGDSVEKNVGVLDEILSALKWMFPLQLEAQKSLGSHASLSCMVWFLKHQDLPGKEKSIAALKELLSFGDKNNVEALSQIEGVNELLVELVNKRISPTITKNSLRVIWHMVSSSESECGEKMKISFVELGFLNTLLGILIDSEKSICEKALAIFDCLCSCEKGRESAFGNDLTVPVLVKKVLRISSLSTDYSVSAIWKMCKFGEEEEEGKVLVEALQVGAFQKLLLVLQVGCGDSTKEKATELLKMMNPYRAELVECIDSDFKNLKRSF 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272467g00003 441 SUPERFAMILY RING/U-box 24 103 - -
Stsc272467g00003 441 CDD RING-Ubox_PUB 28 80 IPR045210 -
Stsc272467g00003 441 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Stsc272467g00003 441 Pfam U-box domain 27 98 IPR003613 GO:0004842|GO:0016567
Stsc272467g00003 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 105 IPR013083 -
Stsc272467g00003 441 SUPERFAMILY ARM repeat 148 419 IPR016024 -
Stsc272467g00003 441 MobiDBLite consensus disorder prediction 1 16 - -
Stsc272467g00003 441 Gene3D - 118 420 IPR011989 -
Stsc272467g00003 441 PANTHER WDSAM1 PROTEIN 24 419 IPR045185 GO:0061630
Stsc272467g00003 441 MobiDBLite consensus disorder prediction 1 23 - -
Stsc272467g00003 441 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Stsc272467g00003 441 FunFam RING-type E3 ubiquitin transferase 27 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272467g00003 Stsc-Chr272467 11711 13385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272467g00003 5 441 U-box Gene Family AT5G37490 43.919 3.43e-118 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272467g00003 - - gmx:100794340 664.07