Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272465g00002 ATGAAGTGTTTTCCATTTAACTATGGAGAGAAAAAGGATGATCCTAGGAACTTTCTATCGCTTTCGGGTCGGTCCAACATGTCTACTTATGTTGAAGGTGAGATGAAGAGATCCGGTTCCGAATTGAATTCTCAGGATGTTTCAGACAACAGCACAGATTCCTTCAGGAGGAATGCATTCCCAAGTATGTCACAGAGACCAAGCAACCTCAGAGTATTCTCTGTATCGGAGCTGAAATCAGCCACCAAGAATTTCAGCCGGTCTGTTATGCTTGGAGAGGGTGGGTTCGGGTGTGTCTACAAGGGACTTATCAAGAGTGCTGATGATCCTTCAACAAGAATTGAAGTTGCAGTCAAGCAACTTGGCAAAAGAGGGATTCAGGGGCATAGGGAATGGGTTACAGAAGTGAATGTTCTAGGCATAGTGGAGCATCCTAATCTTGTGAAACTAGTTGGATACTGTGCCGAAGATGATGAAAGAGGAATCCAGAGGCTTCTAGTTTATGAATACATGCCAAAAAGAAGTGTTGAACATCATTTGTCCCCAAGATCAGAGACTCCTCTACCATGGAGCATGAGATTGAAGATAGCTCTAGATGCAGCTCGTGGCTTAACATACCTGCATGAGCAAATGGATTTTCAGATAATATTCAGAGATTTCAAATCTTCAAACATCCTTCTGGATGATGAGTGGAATGCAAAGCTATCTGACTTTGGTTTAGCAAGATTGGGACCATCTGATGGATTAACTCATGTCTCAACTGCGGTAGTAGGAACAATGGGGTATGCAGCTCCTGAATATGTTCAAACCGGGAGGCTCACATCAAAGAGTGATGTATGGAGCTATGGAGTCTTCCTTTATGAACTCATCACCGGGAGGCGCCCCATCGATAGAAACCGGCCTAAGGGCGAGCAGGTTCTCTTGGAATGGATAAGGCCATACCTCTCAGATGCTAGGAAATTCCAGATAATATTGGATCCAAGACTTGATAGGAAACACCTCTTCAAGTCTGCTCATAGACTCGCCATGGTAGCTACCCGTTGCTTGGTTAGAAATCCCAAGAACCGTCCCAAGATGAGTGAGGTGTTAGAAATGCTGAACCAGATCATGGATTCTTATGTAGATGCCAATCCACACAACATTGTAGAATCTTCCCACCATGACACTGAAATAAACAACAAGAAAAGGCTCATGATGGATACAAAACCTGCAGATTGCACTAATTGGTTTAGAATGTGGAGACCAAAGGTCATACGAGCATGTTGA 1266 0.4368 MKCFPFNYGEKKDDPRNFLSLSGRSNMSTYVEGEMKRSGSELNSQDVSDNSTDSFRRNAFPSMSQRPSNLRVFSVSELKSATKNFSRSVMLGEGGFGCVYKGLIKSADDPSTRIEVAVKQLGKRGIQGHREWVTEVNVLGIVEHPNLVKLVGYCAEDDERGIQRLLVYEYMPKRSVEHHLSPRSETPLPWSMRLKIALDAARGLTYLHEQMDFQIIFRDFKSSNILLDDEWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKSDVWSYGVFLYELITGRRPIDRNRPKGEQVLLEWIRPYLSDARKFQIILDPRLDRKHLFKSAHRLAMVATRCLVRNPKNRPKMSEVLEMLNQIMDSYVDANPHNIVESSHHDTEINNKKRLMMDTKPADCTNWFRMWRPKVIRAC 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272465g00002 421 SUPERFAMILY Protein kinase-like (PK-like) 61 366 IPR011009 -
Stsc272465g00002 421 FunFam Serine/threonine-protein kinase BIK1 51 170 - -
Stsc272465g00002 421 ProSiteProfiles Protein kinase domain profile. 85 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272465g00002 421 MobiDBLite consensus disorder prediction 33 63 - -
Stsc272465g00002 421 Gene3D Phosphorylase Kinase; domain 1 57 170 - -
Stsc272465g00002 421 Pfam Protein tyrosine and serine/threonine kinase 90 366 IPR001245 GO:0004672|GO:0006468
Stsc272465g00002 421 ProSitePatterns Protein kinases ATP-binding region signature. 91 119 IPR017441 GO:0005524
Stsc272465g00002 421 PANTHER OS01G0588500 PROTEIN-RELATED 52 369 - -
Stsc272465g00002 421 CDD STKc_IRAK 91 369 - -
Stsc272465g00002 421 Gene3D Transferase(Phosphotransferase) domain 1 171 392 - -
Stsc272465g00002 421 FunFam Serine/threonine-protein kinase PCRK2 171 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272465g00002 Stsc-Chr272465 11444 14033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272465g00002 1 388 Glycoside Hydrolase AT3G07070 42.857 5.54e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc272465g00002 PK_Tyr_Ser-Thr 5.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272465g00002 - - gmx:100305438 683.33