Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272456g00001 ATGACAAGGCCAATGCATGGATCCCTCCGCCGTCGATTGGACTCCTGCAAATCCACCTACTCCACCGTAGATGATATCGTTACGCACCTCCGCTCCACTTATCCCGAATACCACCGCCTCAAGCACCAAACCCTAACCAGATTAGTTCAACGACTTCTCAATCCACGTCCCAAACACGCGCCCAATGTGCTAAAAATGATGCATGGCCAGGAAGAACAACAAGAAGAAGAAGAAGCAGCAGCAGCTCAGTTTTCTGCATCTACGTCCTGTACTTCAAGCTCGACATCAGAGGACGCAATTTTACGGGAGGATTACGAACCTGCTGGTGTGGATTTGATGAAGACGATGCTGCGGAAAGCGTACACTCCCTCGAAGACGAAGCCCGTTGTGGAAGATAAGATCGTCGAATTGGAGTTCGCCAATAATAGCAAGGATACTAATGATTCAGTGAAAGAGAAAGAGAAGGCGGGACCTCGATTTAGTGATTTTGGTGGAATGAAGGATACTTTGGAGGATCTTTTATATAAAACTTCAGCTGCTGAATTGGTTTCTGGAGTTTCCGGTGCATCTGAAGAGAATGTCCCTTCAATAATCTTCATTGATGAGATTGATTCAATTGCTTCGAAAAGAGAGAATTATCAGCGAGGAATGGAGCAAAGAATTGTAGGACAGTTGCTGGCATGCATGGATCAATCCAATAAGGATTACAAAGGTCATAATGTTGTTGTAATTGCAGCTACAAACAGGCCTCATGCTCTTGACTCGGCCTTGAGAAGGCCCGGGCGGTTTGATTGGGAAATATTTATGGACATTCCTGATGAAGCGGCAAGAGAACATATCCTCTCTTTGGCCCCTCGCGATGTTCCACTTGAGGGTTCATTGGATCTAAAATACATAGCCCGGTCTACACCAGGATATGTGGGTGCTGATTTGGAAGCCTTGGTTAATGAGGCTTGTGTGTTGGCCATAAAGAGATACATTTCTGGATGTGGAAGGTTCAAGAAATGTGAACTTGAGACAAGTTATCTTGGAGACTGGTGGAAGAAAACTCGGCTTCTTGAAGATGTGGATAAGCTTTTCTGTACAATGCCCGATTTCCAGGAAGCTCTGAAAAATGTACAACCTTCATTAACAAGAGAAGGCTTCTCATCGGTTCCCAATGAGAAATGGGAAGATATTGGGGGCCTTGATTATTTAAGGGAGGAGTTTAAATCCAAAGTAATAGGGCCGATAAAATATCCTGAGGCCTATAAGGAATTTGGGTTGGCAAGTCAGATGGGAATTTTGCTTTTCGGGCCACCTGGTTGTGGTAAAACACTAACTGCCAAAGCTGTTGCCAATGATGCAGGAGCTAATTTTATTTATATTAAGGGGCCTGAACTCTTAAGTAAATTTGTTGGAGAAAGTGAGCGACAAGTTCGATTACTGTTTAGTCGTGCAAGGGCATGTTCACCCTGTATAATCTTCTTTGATGAGGTGGATGGTTTGTCAGCCAAACGCGATATGGAAGGTGGATCAGGTGTTGAAAGAGTAGTGACCCAGTTACTCGCTGAGCTAGACGGTGCACAAGGCGTTATTGTCATTGGTGCTACAAATAGGCCTGATAAGATGGATGGGGCTCTCCTCCGTTCTGGTAGATTTGGTAAAAAATTTTATATTCCTTTGCCAAGCTTTGAACAGCGATTTTCAATATTAAAAGTTCTTGCAAGGAAGAAGCCTGTTGATTCTACCGTGGATTTGAGAGCCATAGCTAAAGCTTGTGAAAATTTTAGTGGCGCAGACCTTGCTGAATTGATGGATGAAGCAGGTTTTGCTGCTGTTAATGAGAAATTGAGCTTAGATCAAAGTTTGAGGTCAATATTGGCAAGACATTTTGATATAGCGCTTAGCAAGGTCATTAAATCTGTGTCTCCCGAGGAAAGGCGCAGCTATGAGGTCTTGGCAGATCAATTTAAAGCATCTCGTTGA 1968 0.438 MTRPMHGSLRRRLDSCKSTYSTVDDIVTHLRSTYPEYHRLKHQTLTRLVQRLLNPRPKHAPNVLKMMHGQEEQQEEEEAAAAQFSASTSCTSSSTSEDAILREDYEPAGVDLMKTMLRKAYTPSKTKPVVEDKIVELEFANNSKDTNDSVKEKEKAGPRFSDFGGMKDTLEDLLYKTSAAELVSGVSGASEENVPSIIFIDEIDSIASKRENYQRGMEQRIVGQLLACMDQSNKDYKGHNVVVIAATNRPHALDSALRRPGRFDWEIFMDIPDEAAREHILSLAPRDVPLEGSLDLKYIARSTPGYVGADLEALVNEACVLAIKRYISGCGRFKKCELETSYLGDWWKKTRLLEDVDKLFCTMPDFQEALKNVQPSLTREGFSSVPNEKWEDIGGLDYLREEFKSKVIGPIKYPEAYKEFGLASQMGILLFGPPGCGKTLTAKAVANDAGANFIYIKGPELLSKFVGESERQVRLLFSRARACSPCIIFFDEVDGLSAKRDMEGGSGVERVVTQLLAELDGAQGVIVIGATNRPDKMDGALLRSGRFGKKFYIPLPSFEQRFSILKVLARKKPVDSTVDLRAIAKACENFSGADLAELMDEAGFAAVNEKLSLDQSLRSILARHFDIALSKVIKSVSPEERRSYEVLADQFKASR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272456g00001 655 Pfam AAA+ lid domain 294 327 IPR041569 -
Stsc272456g00001 655 Pfam AAA+ lid domain 578 612 IPR041569 -
Stsc272456g00001 655 Gene3D - 142 271 IPR027417 -
Stsc272456g00001 655 Pfam ATPase family associated with various cellular activities (AAA) 177 269 IPR003959 GO:0005524|GO:0016887
Stsc272456g00001 655 Pfam ATPase family associated with various cellular activities (AAA) 428 555 IPR003959 GO:0005524|GO:0016887
Stsc272456g00001 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 372 IPR027417 -
Stsc272456g00001 655 FunFam ATPase, AAA family protein 386 561 - -
Stsc272456g00001 655 ProSitePatterns AAA-protein family signature. 241 259 IPR003960 GO:0005524|GO:0016887
Stsc272456g00001 655 SMART AAA_5 106 273 IPR003593 GO:0016887
Stsc272456g00001 655 SMART AAA_5 424 557 IPR003593 GO:0016887
Stsc272456g00001 655 Gene3D - 386 645 IPR027417 -
Stsc272456g00001 655 Gene3D - 272 380 - -
Stsc272456g00001 655 Gene3D - 556 630 - -
Stsc272456g00001 655 ProSitePatterns AAA-protein family signature. 525 543 IPR003960 GO:0005524|GO:0016887
Stsc272456g00001 655 PANTHER AAA-FAMILY ATPASE 175 653 - -
Stsc272456g00001 655 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 651 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272456g00001 Stsc-Chr272456 1602 4644 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272456g00001 365 652 Calmodulin-binding Proteins AT3G56690 44.710 3.78e-70 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272456g00001 K14571 - gmx:100809594 639.032