LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc272455g00002	ATGATGGCATCGGAGCAACACGACACCGTTTTCCCAGACATGGACGACGATGACGAGGAGTCCCAAGAGGACGAAGAAGAGGAAGATATCGACGACGACGACGTTTTGCCCGATGACGAAGAAAACGAGCCCTCTCCCTCCACGTCCTCCGCTGCCCTCGCCGTCACCGTCGCTGTTCCCTCCGCCGCCATCCCCAACGGAGAAAATGCTCCAATTACAACCCCTACAACCAACGCGGCCACCACCGTGGTCGTTGCCCTGGAAGGCAGCTCCTCCGATCCGAAACGGCAGCAGCAAATCGAGGAGAAGAAGCCGCTCGACGATTCCCGGAGGCTGTTCCAGCGGCTGTGGACCGACGAGGATGAGATCGAGCTTCTGCAAGGGTTCCTCGACTACACATCGCAGCGAGGCTCGTCACACCACAACGACACGGCTTTGTTCTACGATCAAATCAAGTCGAAGCTGCAGCTGGATTTCAACAAGAACCAGCTGGTGGAGAAGATCCGGAGGCTGAAGAAGAAGTACCGCAACGTTCTCAACAAGATTGGTTCCGGTAAGGAATTCAACTTCAAGAGTGCTCACGATCAAGCCACCTTCGAGATTTCACGCAAGATCTGGAGCAATTTGGGCCCAGTCGCTGATAATGCCTTGGATGACGACGAAATCAACCTCAATCCCAATCCTAACCCTAACCCTAACCTCAATTTTACCTTCGCACTCCCCGCGCCCAGGACTGAGCCGCTCTTCGGGAATTCCTCCGAGAAGAAAACGCCGCCTTCGCGGAAGCGATCGCGGCCTCGATCATCCGCTGCGACGACTACGGTGAAAATTGAAGAGAGGCGCGAGTCAATGGATGGATCTGCGTCACATAAAGAACATAACTTTAATCTCAACGCTGCCGCTACAGGTCTCCCTGCAACGCAGAACAATAATTGTGAGAGTAACAAGTGTAGCAGTGGATATGGCATACCGGGTTTGGTTGAAGAGACGGTTAGGAGTTGTTTGTCGCCGTTGGTGAAGGAATTGGTGGGTGGCGCTTCCATGGGAGGTGGTCACTTTGGCGGAAGAGGGTCTGGAGTTGGGGGCTTTTCACTGAACCCCATACCGTTGGGGTTTGGAGCAATGAATAATTTGGGTTTGGGTATGGGTATGGGTTTGGGTTTGGGTGGTGGGGAGGTGGTGGATGAGAGATGGAGGAAGCAGCAGATATTGGAATTGGAAGTGTACTCCAAGAGGCTGGAACTGGTTCAGGAACAGGTCAAAGCTGCTCTCGAGGAATTGCGGTCAACGGCAGGAAGCTGA	1302	0.5392	MMASEQHDTVFPDMDDDDEESQEDEEEEDIDDDDVLPDDEENEPSPSTSSAALAVTVAVPSAAIPNGENAPITTPTTNAATTVVVALEGSSSDPKRQQQIEEKKPLDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFNFKSAHDQATFEISRKIWSNLGPVADNALDDDEINLNPNPNPNPNLNFTFALPAPRTEPLFGNSSEKKTPPSRKRSRPRSSAATTTVKIEERRESMDGSASHKEHNFNLNAAATGLPATQNNNCESNKCSSGYGIPGLVEETVRSCLSPLVKELVGGASMGGGHFGGRGSGVGGFSLNPIPLGFGAMNNLGLGMGMGLGLGGGEVVDERWRKQQILELEVYSKRLELVQEQVKAALEELRSTAGS	433

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc272455g00002	433	MobiDBLite	consensus disorder prediction	11	41	-	-
	Stsc272455g00002	433	MobiDBLite	consensus disorder prediction	245	290	-	-
	Stsc272455g00002	433	MobiDBLite	consensus disorder prediction	274	289	-	-
	Stsc272455g00002	433	Pfam	Protein of unknown function, DUF573	113	207	IPR007592	GO:0006355
	Stsc272455g00002	433	MobiDBLite	consensus disorder prediction	1	54	-	-
	Stsc272455g00002	433	PANTHER	BNAANNG10740D PROTEIN-RELATED	15	426	IPR007592	GO:0006355
	Stsc272455g00002	433	Coils	Coil	406	430	-	-
	Stsc272455g00002	433	Coils	Coil	161	181	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc272455g00002	Stsc-Chr272455	6091	8097	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc272455g00002	2	429	GeBP Transcription Factor Family	AT5G28040	42.675	5.65e-91	280

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GeBP	Stsc272455g00002		DUF573	1.6e-34	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc272455g00002	-		-	gmx:100790030	397.897