Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272450g00001 ATGGAAATGAATGATGAGAACTCTCTCAAACTCTTTAGCTTCAATGCCTTCAACACAATCCATCCACCTAAAAATGATGGGTACTGGGATCTATCAAAAAAGGCACTTGCTTATGGCAAAGGAAATCCTTTAGCATTGAAAGTCTTGGGATCATTTCTTCATTCCAAAAGCGAAAAGGAATGGGACAATGCATTGAAAAAACTAAGAAGGATTCCTAATGCAGATATTCAAAAGGTGTTGAGGCTGAGTTTCAATGAATTAGATGAAACGGAGAAAGATATATTTTTAGATATTGCATGTTTTTTCAAAGGGGAAGAGAAAGAAAAAGTAGCCAGGATATTGAATGAGTGTGGTTTCTATGCAGATATTGGAATAAGAAATCTCTTAGACAAGGCTCTTATATCAATAGCTATGAATCAAAGCATACAAATGCATGACTTGATACAGGAAATGGGTCATAAAATTGTGTGTGAAGAATCTCTCAAGAACCCTGGAAAGCGAAGCAGAGTGTGGCATCCAGATGAAATATGCGACATATTAAACAATGATAAAGGGTCTGCTACAATTGAAACCTTATATTTGGATATGACTCAGGGTACAGAAATATGTGTACACTCTGATGCATTTAGAAAGATGCCAAAACTAAGGTTACTTGCTTTTGCTAGTAGTGGCATTGGTTATGGGAGAAAGAGAGTTGATTATACTTTGAGTCTTCCAACAAATCTGGAGTTGCCTAATAACTTGAGATATATTCAATGGGATGGATGCCCATTAAAATCTCTATCAACCACTTCTTGGCCTAGCAAGCTTGTTGAACTCTCCATGCCATACAGTAATGTTGAAAAGCTCTGGGATGGGAGACAGAACTTGCCCAGTTTGGAGGAAATTAATCTTTATGGTTCAAGACAATTGATAGAGTGTCCAGATTTTTCAGGTGCCCCAAATCTAAAAACAATATGGCTGAATCAATGTGAAAGCTTGACTCAAGTTCATCCTTCTGTTTTCTCCCTTCCAAAACTTGACTTTTTAGCTGTGTATGGATGTAAAGAACTTAAGAGCCTTTCTAGCAATGATTGTTCACCGTCTCTTCGCTCCGTGGTTGCCTACAGTTGCCCAAATCTGCAAGATTTCTCAATCCCCATTTCGAAAAATCAGTCTAATATTCATGTGCATTTGAGATCAACTGCCTTGAAACAAATGCCATCATCACTTATGAATCTTCAAAATCTTACAAACTTCTCTTTTCCAATCAGTGATCTCCTGATGGATCTTCCTGAAAAATACACCAATCAAATCATGCTTTCAGACCCTAACAATCCTGAATGTGACTCAGTGGCCACCTTACGCCGCATACTGCCCAGCCCTATGTTCCATTATCTAAGAGAGCTGAAATTTGATGGATGCCAAAGCTTGACTGAACTCCCAGACAACATCTCTTTGTTATCATTATTGTCATTCTTAGCCCTCCATAACACTAATGTCATGACCTTTCCAGAAACCATTAAGACTCTTTCGCGGCTCAGGTGTGTTACAATTTGTCACTGTGAAAGGTTACAGGCCCTACCAGCACTTCCACCTTCAGTTCATAGCTTAAAGCTTTGGGATTGCAAATCTTTGAAGAAAGTGTCAAGTTCCACAGAGCAACTAAAGAGACAGCACGCTACTACTTTCACATTTCTGAACTGCATGAAGTTGGATGAAGAGTCATACAACACCATTTTGAAAGATGCCATTGCAAGGGTGGAATTTAGGGCTAAAGCACAACAACTATCAGCAGGCCTAGAAGAAAGCAAGAAAGAAGAATGCACTAATGTTGATGATGATTTTGCTGATGACTTTATTTATGAGCAGAACAAGAATGTTGGCAAGATTTGTTATTTCTTGCCAATCACTGGGAGTAAAGTTGGTGACTTATTGTTCCATGATTCTTGTGCACAAAAGTCCATGACTATTCAAGTTCCACAACTTTCTAATTTCTTTGGTTTCATATTCTACTTGGTTGTTCCTCCAATACAACCATGTGATGTGGGTGACGAAGAACTTGAGATTTTGTTTGGATTTGAAAGCTACTTGGAAACAAGTTGGGGTGAAAGGACTCATATAGCAAGTTCATGCTCAATAGCATGGAACTGCGAGTTTTACCATGGATTCAAGCTGAATGTTATGTCGGATCATGTGTTATTGTGGTATGATTCGGAATGCTGTAAGCGGATAATGGAAATAATTGAAGGAAGAAAGGCTACTGCTGATGATGATGATGATGATGATGATGAGCAGAATGCAAATCTGACAGTTAAGTTCGTTGCTCGCTTACCAAACAAGGAGGAAGTGGCGATAAAAGCGTGCGGCATCCGTTGGATATATCCAAATGAATCAAGAAGGTGTAGATTCAAAAGAAGAAGGGAAGATTTCGAGTTAGAAGCCATTGCATCTCCAAATGGAGAGAAGGGCTTGGAATCTGATGTTGATGGTGAAGAACTAGTTCCTCCAACAAAGAAATTTAAGCATGGTAGTTTCTTGGAAGCTCCCTCAATCCTTCAAGTTGAATCAATAGAAGACTTGAGGTAA 2568 0.3882 MEMNDENSLKLFSFNAFNTIHPPKNDGYWDLSKKALAYGKGNPLALKVLGSFLHSKSEKEWDNALKKLRRIPNADIQKVLRLSFNELDETEKDIFLDIACFFKGEEKEKVARILNECGFYADIGIRNLLDKALISIAMNQSIQMHDLIQEMGHKIVCEESLKNPGKRSRVWHPDEICDILNNDKGSATIETLYLDMTQGTEICVHSDAFRKMPKLRLLAFASSGIGYGRKRVDYTLSLPTNLELPNNLRYIQWDGCPLKSLSTTSWPSKLVELSMPYSNVEKLWDGRQNLPSLEEINLYGSRQLIECPDFSGAPNLKTIWLNQCESLTQVHPSVFSLPKLDFLAVYGCKELKSLSSNDCSPSLRSVVAYSCPNLQDFSIPISKNQSNIHVHLRSTALKQMPSSLMNLQNLTNFSFPISDLLMDLPEKYTNQIMLSDPNNPECDSVATLRRILPSPMFHYLRELKFDGCQSLTELPDNISLLSLLSFLALHNTNVMTFPETIKTLSRLRCVTICHCERLQALPALPPSVHSLKLWDCKSLKKVSSSTEQLKRQHATTFTFLNCMKLDEESYNTILKDAIARVEFRAKAQQLSAGLEESKKEECTNVDDDFADDFIYEQNKNVGKICYFLPITGSKVGDLLFHDSCAQKSMTIQVPQLSNFFGFIFYLVVPPIQPCDVGDEELEILFGFESYLETSWGERTHIASSCSIAWNCEFYHGFKLNVMSDHVLLWYDSECCKRIMEIIEGRKATADDDDDDDDEQNANLTVKFVARLPNKEEVAIKACGIRWIYPNESRRCRFKRRREDFELEAIASPNGEKGLESDVDGEELVPPTKKFKHGSFLEAPSILQVESIEDLR 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272450g00001 855 Pfam NB-ARC domain 4 87 IPR002182 GO:0043531
Stsc272450g00001 855 Gene3D - 2 88 IPR042197 -
Stsc272450g00001 855 Pfam Leucine Rich Repeat 269 288 IPR011713 -
Stsc272450g00001 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 98 IPR027417 -
Stsc272450g00001 855 Gene3D Ribonuclease Inhibitor 446 580 IPR032675 -
Stsc272450g00001 855 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 416 IPR044974 GO:0006952
Stsc272450g00001 855 SUPERFAMILY L domain-like 192 551 - -
Stsc272450g00001 855 Gene3D Ribonuclease Inhibitor 172 386 IPR032675 -
Stsc272450g00001 855 SUPERFAMILY "Winged helix" DNA-binding domain 75 180 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272450g00001 Stsc-Chr272450 138 2905 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272450g00001 28 507 WRKY Transcription Factor Family AT4G12020 32.720 3.02e-58 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272450g00001 - - ahf:112777814 1303.89