Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272448g00003 ATGTGTAGAAGAAGAAGTGGAAGTGGGTGTTGGTTAGTTGGGATCTTGATTTTGGTAGTGAGGGTATTGGGAGGAGATGGGTACCCACTTGAGGATCTGGTGGTCAACCTGCCTGGACAGCCCAAAGTTGACTTCAGCCAATATGCTGGCTATGTTGATGTTGATTCCAACCATGGAAGAAGCCTCTTCTACTATTTTGTTGAGGCTGCTCTTGATTCTCACAATAAGCCCCTCACTCTTTGGCTCAATGGAGGTCCGGGGTGTTCTTCAGTTGGAGGAGGTGCATTTACTGAATTAGGACCTTTTTTTCCTAAAGGAGATGGACGTGGTCTAAGAAGAAATTCTAAGTCATGGAACAAAGCATCCAACCTTCTGTTTGTTGAGTCTCCTGCCGGAGTTGGTTGGTCATACTCAAATATAAGTTCAGATTATAATGCCGGAGATGCATCCACCGCCAATGATATGTATTTGTTCATGCTGAAATGGTATGAGAAGTTCCCATCATTCAGATCAAGAGAGCTGTTCCTCACAGGAGAAAGCTATGCAGGACATTACATACCACAGTTAACTAATGCTCTACTAGATCATAATGCTCGGTCAACTGGCTTCAAATTCAACATTAAAGGGGTTGCTATTGGAAACCCACTTTTGAGACTTGATCGGGATATACCATCAACATACGAATACTTTTGGTCCCATGGAATGATTTCTGATGAAGTTGGACTTGCTATTATGAATGATTGCGACTTTGATGATTATGTGTACGAAGATCCTCACAATGTTTCTCGTTCATGCGCCAACGCCATACGTGAAGCGAATGCTATAGTGGGCGATTATGTAAACAACTATGATGTGATTCTTGATGTTTGCTACCCCTCCATTGTAGAACAAGAGTTGAGATTGAAAAAAGTGGCCACTAAAATAAGTGTAGGTGTTGATGTCTGCATGAGTTATGAAAGGCGTTTCTACTTCAACCTTCCTGAGGTTCAGAAGGCTCTCCATGCAAATCGTACCAAGCTTCCTCATAGCTGGTCCATGTGTAGTCAAGTTCTAAACTATAACGAAACTGATGGTAACATCAACATCCTTCCAATTCTCAAAAGGATAGTCCAAAACCATATCCCAGTATGGATTTTCAGTGGCGACCAAGATTCTGTTGTGCCGTTATTGGGATCTCGAACGCTAATTCGTGAACTAGCTCATGAATTGCACTTCAAAGTTACAGCCCCTTATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTGACAGAATATGGGAAATTGTTGACTTTTGCAACTGTAAGAGGAGCTGCTCACATGGTTCCATACTCACAACCTTCAAGAGCATTGCATTTATTCACTTCATTTGTGAGAGGAAGGAGGTTGCCAAATACAACACGTCCTTCCATTGATGATTGA 1425 0.426 MCRRRSGSGCWLVGILILVVRVLGGDGYPLEDLVVNLPGQPKVDFSQYAGYVDVDSNHGRSLFYYFVEAALDSHNKPLTLWLNGGPGCSSVGGGAFTELGPFFPKGDGRGLRRNSKSWNKASNLLFVESPAGVGWSYSNISSDYNAGDASTANDMYLFMLKWYEKFPSFRSRELFLTGESYAGHYIPQLTNALLDHNARSTGFKFNIKGVAIGNPLLRLDRDIPSTYEYFWSHGMISDEVGLAIMNDCDFDDYVYEDPHNVSRSCANAIREANAIVGDYVNNYDVILDVCYPSIVEQELRLKKVATKISVGVDVCMSYERRFYFNLPEVQKALHANRTKLPHSWSMCSQVLNYNETDGNINILPILKRIVQNHIPVWIFSGDQDSVVPLLGSRTLIRELAHELHFKVTAPYGAWFHKGQVGGWVTEYGKLLTFATVRGAAHMVPYSQPSRALHLFTSFVRGRRLPNTTRPSIDD 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272448g00003 474 SUPERFAMILY alpha/beta-Hydrolases 32 464 IPR029058 -
Stsc272448g00003 474 FunFam Carboxypeptidase 29 292 - -
Stsc272448g00003 474 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185
Stsc272448g00003 474 Gene3D - 315 351 - -
Stsc272448g00003 474 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 35 448 IPR001563 GO:0004185|GO:0006508
Stsc272448g00003 474 Gene3D alpha/beta hydrolase 30 291 IPR029058 -
Stsc272448g00003 474 Pfam Serine carboxypeptidase 39 461 IPR001563 GO:0004185|GO:0006508
Stsc272448g00003 474 FunFam Carboxypeptidase 362 461 - -
Stsc272448g00003 474 Gene3D - 362 461 - -
Stsc272448g00003 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Stsc272448g00003 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 431 444 IPR001563 GO:0004185|GO:0006508
Stsc272448g00003 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Stsc272448g00003 474 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272448g00003 Stsc-Chr272448 25765 33449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272448g00003 321 464 Calmodulin-binding Proteins AT2G22960 25.000 2.21e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272448g00003 K16297 - gmx:100801752 832.787