Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272446g00002 ATGTTCTGTTACGGCCTCCTCGACGAGACTCAGAACAAGCTCGATTACGTCCTCTCTCTTACCGTCGAGAACTTCCGCGAACACCGCCTCCTGACTCTCGTCTTTAAGTCCGGCATGGCCAAGTCCAATCACCACACCAAGGTTCTCATCCACCAGTACCACATTAGGTTGAAATTTCTTCTTTCAGCG 189 0.5079 MFCYGLLDETQNKLDYVLSLTVENFREHRLLTLVFKSGMAKSNHHTKVLIHQYHIRLKFLLSA 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272446g00002 63 PANTHER 30S 40S RIBOSOMAL PROTEIN 4 57 IPR022801 GO:0003735|GO:0015935|GO:0019843
Stsc272446g00002 63 SUPERFAMILY Alpha-L RNA-binding motif 10 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272446g00002 Stsc-Chr272446 11447 11635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272446g00002 4 56 Cytoplasmic Ribosomal Protein Gene Family AT5G15200 79.245 1.15e-24 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272446g00002 K02997 - gmx:100305663 92.0485