Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272445g00001 ATGGATTGGCTTGAGATATCATGGGAGGATTTACGTATCAAAGAGCGAGTTGGCGCTGGCTCATTTGGGACAGTGCACCGTGCGGAATGGCATGGATCAGATGTTGCCGTCAAGGTTTTAACAGTTCAGGATTTCAGTGATGATAAATTAAAGGAGTTTCTGAGAGAGGTTGCAATAATGAAACGGGTTCGCCATCCGAATGTGGTGCTCTTCATGGGTGCTGTTACAAAACGCCCCCATCTATCAATTGTGACAGAATATTTGCAAAGAGGTAGTTTATACCGACTGATACATAGGCCAACAGCTGGTGAACATTTGGATAGCAGGAGAAGATTACGGATGGCTCTAGATGTGGCTAAAGGGATCAATTATCTTCATTGTCTAAAACCTCCTATCGTGCACTGGGATCTCAAATCCCCAAACTTGTTAGTGGACAAAAACTGGAACGTGAAGGTTTGTGATTTTGGATTGTCTAGATTTAAGGGAAATACTTTCATACCATCAAAGTCTGTTACTGGAACACCTGAATGGATGGCTCCAGAGTTTCTCCGTGGAGAACCTTCAAATGAGAAATCCGATGTTTACAGTTTTGGAGTTATCCTATGGGAGCTTATAACCATGCAACAACCATGGATGGGACTTAGCCCTGCCCAGGTGGTTGGAGCTGTTGGTTTCCAGAATAGGAGGCTTGCCGTTCCTCCAAATGTGTCCCCCGTATTGGTCTCCCTCATGGAATCTTGTTGGGCTGATGACCCCGCTAAACGCCCATCTTTTGCTAGTATTGTTGTGTCGCTGAAGAAGCTGCTCAAGTCTCCAGCAGAGATGATAAAAATGGGTGAGACTTAA 846 0.448 MDWLEISWEDLRIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFSDDKLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLQRGSLYRLIHRPTAGEHLDSRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWNVKVCDFGLSRFKGNTFIPSKSVTGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELITMQQPWMGLSPAQVVGAVGFQNRRLAVPPNVSPVLVSLMESCWADDPAKRPSFASIVVSLKKLLKSPAEMIKMGET 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272445g00001 281 FunFam Serine/threonine-protein kinase isoform 1 1 89 - -
Stsc272445g00001 281 PIRSF ILK 2 277 - -
Stsc272445g00001 281 ProSitePatterns Protein kinases ATP-binding region signature. 17 38 IPR017441 GO:0005524
Stsc272445g00001 281 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Stsc272445g00001 281 Pfam Protein tyrosine and serine/threonine kinase 11 264 IPR001245 GO:0004672|GO:0006468
Stsc272445g00001 281 Gene3D Transferase(Phosphotransferase) domain 1 90 277 - -
Stsc272445g00001 281 SUPERFAMILY Protein kinase-like (PK-like) 3 262 IPR011009 -
Stsc272445g00001 281 FunFam Serine/threonine-protein kinase CTR1 90 275 - -
Stsc272445g00001 281 CDD STKc_MAP3K-like 17 265 - -
Stsc272445g00001 281 PRINTS Tyrosine kinase catalytic domain signature 85 98 IPR001245 GO:0004672|GO:0006468
Stsc272445g00001 281 PRINTS Tyrosine kinase catalytic domain signature 173 183 IPR001245 GO:0004672|GO:0006468
Stsc272445g00001 281 PRINTS Tyrosine kinase catalytic domain signature 192 214 IPR001245 GO:0004672|GO:0006468
Stsc272445g00001 281 PRINTS Tyrosine kinase catalytic domain signature 126 144 IPR001245 GO:0004672|GO:0006468
Stsc272445g00001 281 PRINTS Tyrosine kinase catalytic domain signature 236 258 IPR001245 GO:0004672|GO:0006468
Stsc272445g00001 281 SMART serkin_6 11 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272445g00001 281 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 5 270 - -
Stsc272445g00001 281 Gene3D Phosphorylase Kinase; domain 1 4 89 - -
Stsc272445g00001 281 ProSiteProfiles Protein kinase domain profile. 11 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272445g00001 Stsc-Chr272445 1260 4285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272445g00001 2 279 MAP Kinase Kinase Kinase AT4G24480 83.453 8.52e-177 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Stsc272445g00001 PK_Tyr_Ser-Thr 4.6e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272445g00001 - - adu:107461056 556.214