Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272444g00003 ATGGTTGAACTAACACAAGTACTTGAAATAAAAGCGGTAAACGAGATAAGAAAGACAAAGAAGAAGCACCAATGGAGTGGTCAAGTGTTGGACGCACTGATGGAGCGCCCTTACGAAGCATTCACAGGAAAGGGGGGAGAGAGACCTGATCCTCGGGATTGGGACATCCAACCTGAAGTCTATAATATCATCACAGCACGCCTTCAGAAACAACAAGAAAGTCACATGGAGAAGTCAACAGAGTCAGAGTCAAGTCAAATGGTTGAGAAGAGTGTCTCTTCTCCGTTCATGAACACGACCTCATCAAAGGTAATGTTTTCTATGTCGGAGGTGAAGAAGCACAATACAGACGATTCTGCTTGGATCATTGTCCACGGTCACGTCTACGACTGCACCAGGTTCCTGAAGGACCACCCTGGAGGCTCTGACACTATCCTTATCAATGCCGGCTCTGATTGCACCAAGGAGTTTGATGCCATTCATTCCAACAAGGCTAAGGAGTTGATTCAAGATTTCCGAATTGGTGAACTCATTACCGTAGTAGGTATTGAGGAAGACGAGACACCATTTTTACTAGCTGCAAGAAATGGCATAGTTGAAATGGTGGTGAAGATTCGAAGCCTGATACCAAGTGTGATCCACAACACCAACTCAAGGAAGGAAAACGTGATGTTGGTGGCAGTGAAACACAGACAACCCCATGTTGTGGAGGCACTGAAAACAGAACTAAAAGATGAAGTTTGGAATAACTTGATTCAGGCAGTGGATGATGATGACAACACAGTGTTGCACTTAGCAGCGCAAACACTGATAGGGAACAAGCCTTGGCATGTCGCTGGCACTGCCTTGCAAATGATGTGGGATATCAAGTGGTATCAGTATATTAAGAGCCTTGTACCGCAACGTAGCTACTTCAGAAGCAACAGAGGGTCAAAGACAGCATGGGAAATCTTTGAGACATCACACGAGAGTCTTGTTGAAAACGGCAGCGAGTGGCTGAAGGAAACATCGCATGCTTGCTCCGTGGTGGCGGCGCTTGTTGCGGGTGTCTCCTTCGCCACAGCCAGCCAAGTCCCCGGTGGCACCAACGAGAAAGGCAAGCCAGAACTAGAAGGCCAACCAGCGTTCCATGCATTCGCCATCGCTTCCCTCATCGGGCTTTGCTTCTCTGTCACAGGACTCATAATGTTCCTCTCCATCCTCACATCTCGAAAAGAAGCCAAAGATTTTCGCAGGGCATTGCCACTGAAACTGCTTCTAGGGTTGAGTTCCCTCTTCGTCTCTATTGTGGCCATGTTTGTATCGTTTTGCTCCGGCCATTTCTTCATCATCAGTCGCAAGTATGAGACTTTCCTCTTCTCCTTCTATGCAGCTACTTCCATACCTGTCGCTATCTATGCCTTGGGACAGTTTCCCCTATACTTTGATCTTCTCATTACTATTATCACTAAGGTGCCATGGGCAAGTAACAAAG 1474 0.4695 MVELTQVLEIKAVNEIRKTKKKHQWSGQVLDALMERPYEAFTGKGGERPDPRDWDIQPEVYNIITARLQKQQESHMEKSTESESSQMVEKSVSSPFMNTTSSKVMFSMSEVKKHNTDDSAWIIVHGHVYDCTRFLKDHPGGSDTILINAGSDCTKEFDAIHSNKAKELIQDFRIGELITVVGIEEDETPFLLAARNGIVEMVVKIRSLIPSVIHNTNSRKENVMLVAVKHRQPHVVEALKTELKDEVWNNLIQAVDDDDNTVLHLAAQTLIGNKPWHVAGTALQMMWDIKWYQYIKSLVPQRSYFRSNRGSKTAWEIFETSHESLVENGSEWLKETSHACSVVAALVAGVSFATASQVPGGTNEKGKPELEGQPAFHAFAIASLIGLCFSVTGLIMFLSILTSRKEAKDFRRALPLKLLLGLSSLFVSIVAMFVSFCSGHFFIISRKYETFLFSFYAATSIPVAIYALGQFPLYFDLLITIITKVPWASNK 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272444g00003 491 Gene3D - 182 274 IPR036770 -
Stsc272444g00003 491 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 134 141 IPR018506 GO:0020037
Stsc272444g00003 491 SUPERFAMILY Ankyrin repeat 186 268 IPR036770 -
Stsc272444g00003 491 Gene3D - 100 179 IPR036400 -
Stsc272444g00003 491 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 101 178 IPR036400 -
Stsc272444g00003 491 MobiDBLite consensus disorder prediction 69 94 - -
Stsc272444g00003 491 Pfam Domain of unknown function 331 442 IPR026961 -
Stsc272444g00003 491 Pfam Cytochrome b5-like Heme/Steroid binding domain 108 177 IPR001199 -
Stsc272444g00003 491 SMART Cyt_b5_2 106 178 IPR001199 -
Stsc272444g00003 491 PRINTS Cytochrome B5 signature 153 160 IPR001199 -
Stsc272444g00003 491 PRINTS Cytochrome B5 signature 138 152 IPR001199 -
Stsc272444g00003 491 PRINTS Cytochrome B5 signature 165 177 IPR001199 -
Stsc272444g00003 491 PRINTS Cytochrome B5 signature 128 138 IPR001199 -
Stsc272444g00003 491 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 103 178 IPR001199 -
Stsc272444g00003 491 FunFam Sulfite oxidase, mitochondrial 101 180 - -
Stsc272444g00003 491 PANTHER CASKIN 123 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272444g00003 Stsc-Chr272444 30074 33429 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272444g00003 105 177 NADPH P450 reductases AT1G26340 44.595 4.15e-18 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272444g00003 - - aip:107606717 522.702