Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272435g00004 ATGGCTAGTGGTATGCTCATTTGCGTGGGGTCTGAGTTGGTGAAAACATTTTCCGGTCTGTCCCGGCAGGCGGATCTAGAAACAACGTTCCAGAGAGCAGTAGAGATATGTGGATCATTGAAAACTTTAATTGATGATGCGGATCATAAACAACTGACAGCTATGGAATTGAAGAAGTGGATGGAACGCATTGTGGATATATGCTACGACATGATGTACTTATTGGACGAACTGAATCTACAAGTGGTTGGAAGGGTACGCGTTTTTAGCCATCAGTTCTCTTTCTTCAATCCATTCCGGCGTCATCACCAGGGGATGTATCGTAATCTGAGAGAGGTCATCACTGGCTTGGAAACGCTAGTAGAGGATGCACCTAATGGTTTGGGAATTCAAAAATGTGGTAGACGGGAGATCTTGGAAATAGCTTACCAAAAGCAGAATCTGCTTCAGTCTGACTCTGACCTATGGCAGAGAAATGGAAGAGCACCTGGGATGGGAAAGACTGCACTGGCCCAACGTGTTTCCAGAGATGCTAGAGTGAAGGCGTATTTTGGTGATCCGAAATGGGTATCTGTCTCGGAAGAGTTCAATCTACGACAAATTGTCATGGCCATACTAGGGTTTTCAACTTCTGATCAAATGAACGATGTTGAAATGGAATTGCTGGTACTCATGTTTCGTCGAGTTACTGCTGGAAAAAGATGTCTCTTTGTTCTGGACGACGTAATCAACGAAGATCCTGAACGCTGGCAACTTATAAGGGAGTTTTTCAATTTCTGTGTTGCTGGAAGTAGGATTTTGATAACCACAAGAGATAATCGCTTTGCGGCATTGGCATCCGCATCGGAAGATATCATACCTCTCCACCCACTATCTCATGAAGATTCCTGGGAAATTATCCGGGATACTGTTTATGGTCCTTCAACTCACCCTGGTTTGATGGAGGGACAAGAAATCAGCAAGGAAATCACAAAGAGATGTGCTGGGGTGCCACTATATCTGAGATCTGCTGGTGCTATCATGCGTTACAAACGCAACGGACGTGAATTGCTACCAATACTGTATAGTGACATGTGGGGAGAAGCACAACACAATCAACTGGGGCCTTTATTGATGTTGCTCTATACTCAAGTCTCTTCTTATTCTAAACAGTGCTTATTATATTGTTCCATCTTTCCTAAGGATCACATAATAGTTATAGATCAACTTATCCAATTATGGATAGCTCAGGGTTTTATTATCTCTTATGATGACAATCACATGGAAGAACAAGGCCGGAGAATCTTTCATGAATTGTCAACCGATTCCTTCTTCAAATATAACACAATAGCTGCAACTCCGGGTTCCACATGCCTGTTAGAGAGCGGAATCTCCAACCTCTTCCACGCTATGGCAGAGAACGAATATCGCACAATGCTTCTTGATAGTGGGAAGAAATTTAGAGAGGATGGTGATGTTCCCATAAATTGTCGCCATTGCACTCTAACTATTGCTACTCACACTTGTTTACCCAAGTCCATTCCAAATGCAGAGAAACTCCACACTTTGATGATTTTGTCTCAGTATTCCTCAGTAGACCCAACAAACCTTTCTTGTTTGCTAAGTAATTTGAGGAGGGTCAGGGCACTCATCTTGAGCTCTTGTTCCATAAAAGAAATTCCAAGAAAGGTAGGGAAATTGCTTCATCTGAGATACCTTGACTTGTCTTTCAATCAAGATTTGAAGACCTTGCCTGGAGCAATATGCAATCTGCTTTATCTTCAAACTTTGAATCTCAATGGATGTAGTAGTCTTCGGAAACTGCCCAAAGCATGCAACATTGGAGACTTGGAAAAGCTGAACAATATCCAAGGGAAAATTACCATAGATGGCTTGGGAGCTGACACTGATGCTTCGGAAGATGAAAGAGCAGGTCTAGAGAATAAGAAGGGTTTGCGTGGCTTAGAACTGTGGTTTACTGCTCCAGGAGCCGGTACTAATGATAAAAGGGTACTTGGAGCTTTGAAAGCACCTCCTGAATTGAAAGATCTTGGGATATTTTACTACAGAGGAGAGTTGTTCCCTGCTTGGATGATACAACTGCAGAAGCTTACACATCTAACGCTTTCTGATTGTGAAGAATGCAGTGTTCTTCTCAGGCTTGGAGAACTTCCATCCCTTGAATACCTTAAAATAATGAATATGCCCAGTATAAAAAGGGTGGTGGATTCTGAATTTCTGGGAGCAGGATCAACTGATGCATTCCCAAAGCTAAGAGAACTTTCCTTCGCGAATCTGGATAATTGGGAAGAGTGGGTTGGACTAGGTGATGATTGTGACCAAGCAAATGTTATGCCTCAGCTTTCTTCTTTGTCAATTGTAAACTGCAGAAAGCTAAAGGCAATTCCGAACTACATAAAGCTGAAGAGAAATGCGCACTTTTGGTGTCGCATTGAGCGGCGCCCGAGGTTTCGCATTAACATTAAAAAATGTCCTTCTCTTGATCTATCACATTATGATACTATTGAGTAA 2511 0.4237 MASGMLICVGSELVKTFSGLSRQADLETTFQRAVEICGSLKTLIDDADHKQLTAMELKKWMERIVDICYDMMYLLDELNLQVVGRVRVFSHQFSFFNPFRRHHQGMYRNLREVITGLETLVEDAPNGLGIQKCGRREILEIAYQKQNLLQSDSDLWQRNGRAPGMGKTALAQRVSRDARVKAYFGDPKWVSVSEEFNLRQIVMAILGFSTSDQMNDVEMELLVLMFRRVTAGKRCLFVLDDVINEDPERWQLIREFFNFCVAGSRILITTRDNRFAALASASEDIIPLHPLSHEDSWEIIRDTVYGPSTHPGLMEGQEISKEITKRCAGVPLYLRSAGAIMRYKRNGRELLPILYSDMWGEAQHNQLGPLLMLLYTQVSSYSKQCLLYCSIFPKDHIIVIDQLIQLWIAQGFIISYDDNHMEEQGRRIFHELSTDSFFKYNTIAATPGSTCLLESGISNLFHAMAENEYRTMLLDSGKKFREDGDVPINCRHCTLTIATHTCLPKSIPNAEKLHTLMILSQYSSVDPTNLSCLLSNLRRVRALILSSCSIKEIPRKVGKLLHLRYLDLSFNQDLKTLPGAICNLLYLQTLNLNGCSSLRKLPKACNIGDLEKLNNIQGKITIDGLGADTDASEDERAGLENKKGLRGLELWFTAPGAGTNDKRVLGALKAPPELKDLGIFYYRGELFPAWMIQLQKLTHLTLSDCEECSVLLRLGELPSLEYLKIMNMPSIKRVVDSEFLGAGSTDAFPKLRELSFANLDNWEEWVGLGDDCDQANVMPQLSSLSIVNCRKLKAIPNYIKLKRNAHFWCRIERRPRFRINIKKCPSLDLSHYDTIE 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272435g00004 836 Gene3D - 162 287 IPR027417 -
Stsc272435g00004 836 Gene3D Ribonuclease Inhibitor 521 810 IPR032675 -
Stsc272435g00004 836 Pfam NB-ARC domain 163 345 IPR002182 GO:0043531
Stsc272435g00004 836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 389 IPR027417 -
Stsc272435g00004 836 Pfam Leucine rich repeat 538 595 IPR001611 GO:0005515
Stsc272435g00004 836 PANTHER DISEASE RESISTANCE PROTEIN RP 163 790 IPR044974 GO:0006952
Stsc272435g00004 836 SUPERFAMILY L domain-like 489 801 - -
Stsc272435g00004 836 PRINTS Disease resistance protein signature 582 598 - -
Stsc272435g00004 836 PRINTS Disease resistance protein signature 327 341 - -
Stsc272435g00004 836 PRINTS Disease resistance protein signature 229 243 - -
Stsc272435g00004 836 Gene3D - 371 465 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272435g00004 Stsc-Chr272435 20084 23890 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272435g00004 505 604 WRKY Transcription Factor Family AT4G12020 34.000 9.87e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272435g00004 - - aip:107625957 1050.43