Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272432g00005 ATGGATGGGTTTTCTTGTTTGTTATTCTGCGGGCAGGTTGTTGAAGTTTCGACTTCGAAGACTGGGAAGCACGGTCACGCTAAGTGCCACTTTGTTGGAATTGATATCTTCACTGCCAAGAAGCTCGAAGATATCGTTCCCTCTTCTCACAATTGTGATGTTCCCCATGTGAATCGTACTGACTACCAGCTCATTGATATCTCTGAGGATGGATTTGTGAGTCTGCTCACTGAAAATGGAAACACCAAGGATGATCTCAGGCTCCCTACTGATGATTCTCTCCTGTCTCAGATTAAGGATGGGTTTGCTGAGGGTAAGGACCTTGTTGTCTCTGTCATGTCTGCTATGGGTGAGGAGCAGATTTGCGCCCTGAAGGATATTGGCCCAAAGAACTAA 396 0.4596 MDGFSCLLFCGQVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272432g00005 131 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 21 28 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Stsc272432g00005 131 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 56 125 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Stsc272432g00005 131 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 12 128 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Stsc272432g00005 131 PIRSF Transl_init_eIF5A 2 128 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Stsc272432g00005 131 Gene3D - 1 56 IPR014722 -
Stsc272432g00005 131 NCBIfam translation initiation factor IF-5A 12 124 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Stsc272432g00005 131 SUPERFAMILY Nucleic acid-binding proteins 57 127 IPR012340 -
Stsc272432g00005 131 FunFam Eukaryotic translation initiation factor 5A 57 129 - -
Stsc272432g00005 131 Gene3D - 57 130 IPR012340 -
Stsc272432g00005 131 SMART eIF_5a_2 56 125 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Stsc272432g00005 131 CDD S1_eIF5A 57 127 - -
Stsc272432g00005 131 SUPERFAMILY Translation proteins SH3-like domain 12 64 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272432g00005 Stsc-Chr272432 27714 28592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272432g00005 12 130 Eukaryotic Initiation Factors Gene Family AT1G69410 85.714 6.41e-75 218