Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272432g00004 ATGGCTACTTGGAACTTCTTCAACGCTCAACAAGAAATAGATGAATATCATCCCTTCCAATCTTCCACTTTCCAGTTTCCTTTATATGATTCTGATTATTATTATTATTCTAGTGTAAACAGTAATGAAGAATATCCGGCTCTGGAATATTGGGCAGACGAGTTTTCAATACAAGACATGGAATGTTTCCCTTCAGATCCTTTATACGAAACTATATCCATCAATCAACCAATTTCAGAAGTTAAAGAGTGTGATGATTTTGAGGATATCAAGAAAGGGTTTTCTGTGTGGAATGAAGTGTATGCCGGCTTTGAATCCTGGCAAAAAGTATCACCATCATCATCACTAGTATCCAACAAGAAGAATATTGGAAGGGTTATGAAACGAGAAGAAGAAGAAGAGAGAAGTAGCAAGAGTAGTACGAAGATGCTGACAAGGAAGATGATATCTGAGTACTTCTACATGCCAATAACTCAAGCAGCGAAGGAACTTGATGTTGGGTTAACTCTCTTGAAGAAGAGATGCAGAGAGTTAGGGATTAGAAGGTGGCCCCATAGAAAGCTTATGAGCCTTCAGACCCTCATCAATAATGTTCAGGAGCTTGATGGTGGAGAAAGTGAAGAGAAGCTGAGGAATGCAATTCAGATATTGGAGAAGGAAAAGAAGCTTCTGGAAGAAATGCCTGATATTCAGCTTCAAGATAATACCAAAAGACTTAGACAAGCATGCTTCAAGGCCAATTACAAGAAGAGGAAGCTCATGGCTTCTTCTTCAAGGCCAGTTCTTCATCATGGAGGATTCATTAGCTTTGATGATCAACAACGTCACATCAAATCTGTGTTTTCTTTGCCTCCTTTACCCCACAACATTCAAATGCTCTAG 882 0.39 MATWNFFNAQQEIDEYHPFQSSTFQFPLYDSDYYYYSSVNSNEEYPALEYWADEFSIQDMECFPSDPLYETISINQPISEVKECDDFEDIKKGFSVWNEVYAGFESWQKVSPSSSLVSNKKNIGRVMKREEEEERSSKSSTKMLTRKMISEYFYMPITQAAKELDVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELDGGESEEKLRNAIQILEKEKKLLEEMPDIQLQDNTKRLRQACFKANYKKRKLMASSSRPVLHHGGFISFDDQQRHIKSVFSLPPLPHNIQML 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272432g00004 293 Pfam RWP-RK domain 144 191 IPR003035 -
Stsc272432g00004 293 ProSiteProfiles RWP-RK domain profile. 127 213 IPR003035 -
Stsc272432g00004 293 Coils Coil 207 227 - -
Stsc272432g00004 293 PANTHER PROTEIN RKD4 115 270 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272432g00004 Stsc-Chr272432 19106 20141 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272432g00004 12 261 AtRKD Transcription Factor Family AT1G18790 44.358 9.22e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Stsc272432g00004 RWP-RK 8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272432g00004 - - ahf:112774246 341.658