Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272425g00005 ATGCTGAATTTCTGGAGCTATGCGTGGGTGTGGTCTGGGAACTCTAGACTCTGTTTTGAATTATGGACTTGTTGCCAAATGAGAAGATCAGATAAGGAGCAGTGGTTAATTATCTTCTTTGTTGTGGTGTGGTGTTTATGGAAGGCGAGAAACGAAAAAGTCTTTAGGTGTGGAGCAGTTGAAGAGAGGAAAGGCAAAGCAAAAGCAAAGGAGGAGATAGGACAAGGAAATCGTCAAGTTCTTGGAGATATTAGTAACCTTGATGTGCTTAGAACTACTGATGGCAAGCACATTTCACGGCCTATCACAAGGAACTTCTATGCAAAACTATTGGCAAATTCACAATCTACTGCAAATGTGGGGTCTTCAAAAGCCCAAGCTAATGAACAAGGAGCTACACAGGACAACAAGAACTTTGTTCAAACTGAATCAGACAATACAGCAAGCATTCACAACAAGAAACATGGTTTAGAGGAAAGTGTTGAGCTCCAAAATGAAGGAAGGTTTAAGAAAAGATCTTGTAGCAAGGTCATGACTCCAAACGAAGAAATTACTGCGCAGAGCAAGGCTGCTCAGGATATATCATCTGAGCCTGAGGATCAACATGTTGAGATCAATGCAGACAATGGTGATGTTGATTTGGAAGTGGCAGAGTACCTTGATGATTTATATGAATTCTATAAGCTAACAGAAAATAAGAGTCGGGTTCCAGATTACATGAACTCGCAGAACGAAATCACTGAGAGGATGAGGTTCATTACTGTGGATTGGCTCGTTGAAGTGCACTGGAGATTTAACCTAATGCCTGAGACGCTCTTTCTTGCCATAAACATAATCGATCGCTATCTCTCAATGACAGTTGTACCAAAAGCAGAATTGCAGTTGGTTGGCATTTGCGCATTGCTCATAGCTTGCAAATATGTAGAGATACTGTATCCTCAGGTTAAGGCCTTCGCTAAACTATCAGACGATGCTTACACAAAAAAACAGATAGCCATCATGGAAATGGCAATCCTTGACAAGATAGAATGGTATCTAGCAGTTCCCACGCCCTATCTCTTTTTACATCAATTCATCAGAGATTCTGAGCAGTTAGATCATGAGCTGGAAAACATGGTTTTCTTCCTGGCTGAACTTGGTCTTATGCACTACCAAAACGTTCTGTACTGCCCCTCACTAATAGCTGCAGCAACTATGCTTGCCGCACGTTATGCACTCAACCGGAACCCATTCTGGACTGAAATTCTAAAGCTCAGGACTGGCTATGTAGCAGAACAGATAATGGAATTTTCCAAGATGCTAATCAGCTTTCGGTCAAGTGTTGCAGATTCTAAGTTCAATGCTGTGTTCCAGAAATTTTCCAGTCCAGATAGAGGGGCTGTTGCACTTTTACCTCTACCCAATCCCAAACATCAAATCAGTAATCTCAATTGA 1434 0.4156 MLNFWSYAWVWSGNSRLCFELWTCCQMRRSDKEQWLIIFFVVVWCLWKARNEKVFRCGAVEERKGKAKAKEEIGQGNRQVLGDISNLDVLRTTDGKHISRPITRNFYAKLLANSQSTANVGSSKAQANEQGATQDNKNFVQTESDNTASIHNKKHGLEESVELQNEGRFKKRSCSKVMTPNEEITAQSKAAQDISSEPEDQHVEINADNGDVDLEVAEYLDDLYEFYKLTENKSRVPDYMNSQNEITERMRFITVDWLVEVHWRFNLMPETLFLAINIIDRYLSMTVVPKAELQLVGICALLIACKYVEILYPQVKAFAKLSDDAYTKKQIAIMEMAILDKIEWYLAVPTPYLFLHQFIRDSEQLDHELENMVFFLAELGLMHYQNVLYCPSLIAAATMLAARYALNRNPFWTEILKLRTGYVAEQIMEFSKMLISFRSSVADSKFNAVFQKFSSPDRGAVALLPLPNPKHQISNLN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272425g00005 477 Gene3D - 222 462 - -
Stsc272425g00005 477 Pfam Cyclin, N-terminal domain 223 346 IPR006671 -
Stsc272425g00005 477 PANTHER CYCLINS 181 435 IPR039361 -
Stsc272425g00005 477 SUPERFAMILY Cyclin-like 348 468 IPR036915 -
Stsc272425g00005 477 Gene3D - 236 347 - -
Stsc272425g00005 477 SMART cyclin_7 256 340 IPR013763 -
Stsc272425g00005 477 SMART cyclin_7 353 436 IPR013763 -
Stsc272425g00005 477 FunFam G2/mitotic-specific cyclin 235 347 - -
Stsc272425g00005 477 PIRSF Cyclin_A_B_D_E 47 476 IPR046965 GO:0016538|GO:0044772
Stsc272425g00005 477 SUPERFAMILY Cyclin-like 216 344 IPR036915 -
Stsc272425g00005 477 SMART Cyclin_C_2 349 467 IPR004367 -
Stsc272425g00005 477 Pfam Cyclin, C-terminal domain 349 465 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272425g00005 Stsc-Chr272425 16884 19806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272425g00005 65 465 Core Cell Cycle Gene Families AT2G26760 40.000 1.51e-94 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272425g00005 K21777 - cave:132164002 372.089