Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272425g00001 ATGGAGTCAGATCTTCAGGCAGCGAGTTCGAACGGGTTAACTCGGTACCGATCGGCACCGAGTTTATACTTCACCGACATAATTGACCGGGAATTCTACGAGCACATTTTCAACCGTCCGTCAAGCCCCGAAACAGAGCGAGTCTTCTCCAAGTTCATGAATACTCTCCGTGACGACGATTCTTCTCCTTCACTCCATCTCGATTCTTCTGCTGTCAAGGAAGAAGACCATATCACTCCCTTCCATGAATACCACACCAATAGCCTCAACTATCAAAGCACGGCGAAACCGCCCTTGCCGAATCAGAATCAGAATCTTGCTTCCTCTGGCTCCGTGGAAGGAGCGTTTTCTGATAACAATAACAATAATAATCGGTTGCCGCAGATGAAGAATCATTCTACTCTTGTTAGGCACAGTAGCTCACCTGCTGGATTATTCTCCCAAATTCACATTGAAAACGGTTATGTTGATATGCGGGGGATGGGAGGTTTGGGAGGTGTGAATAAGAGTGTGGAAGAAGTGAAATTCTCTACTACTTCAAGAACAAGGAGGTTCAAGAATCCACAGAATTACTCTTCTTCCTCTTCCACTGGGAGAATGTCCTCAATTGCTGAGATTGGCAACAGGGACAACAGAGAAGACAATCCTGATGTTGAAGCCTTTGGGGAAACTCATGGGGACGATTTCATCGCGGAGTTTTCGCCCTGGGATGATACCGTCCCCGTGAATAATGACATTGTTGGTGGTCTAAAAAGATTCAGAGATGATGATGATGTCAAGCCATTTTCTTCTGCGTTGAATAATGCAGCTGACACTGAGAACGAAAGTAGAGGACAGCAAGGTGCTCCTTTGGCTCATCAAATGAGTTTGCCAAATACTTCAGCTGAAATGGCAGCCATTGAGAAGTTCTTGCAGTTTTCAGATTCTGTTCCGTGCAAAATTCGTGCCAAGAGAGGCTGTGCCACTCACCCAAGAAGTATTGCAGAGAGGGTTAGAAGAACCAAAATCAGTGAGCGTATGAGGAAACTACAAGATCTGGTGCCTAACATGGACAAGCAAACAAACACAGCAGACATGTTGGATTTGGCTGTGGATTACATCAAAGACCTTCAAAAGCAAGTCGAGACGCTTTCAGACTGTCAAGCTAAGTGTACGTGTTCTTCCAAGCCACAGCAATAA 1179 0.4546 MESDLQAASSNGLTRYRSAPSLYFTDIIDREFYEHIFNRPSSPETERVFSKFMNTLRDDDSSPSLHLDSSAVKEEDHITPFHEYHTNSLNYQSTAKPPLPNQNQNLASSGSVEGAFSDNNNNNNRLPQMKNHSTLVRHSSSPAGLFSQIHIENGYVDMRGMGGLGGVNKSVEEVKFSTTSRTRRFKNPQNYSSSSSTGRMSSIAEIGNRDNREDNPDVEAFGETHGDDFIAEFSPWDDTVPVNNDIVGGLKRFRDDDDVKPFSSALNNAADTENESRGQQGAPLAHQMSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVETLSDCQAKCTCSSKPQQ 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272425g00001 392 Gene3D - 321 389 IPR036638 GO:0046983
Stsc272425g00001 392 FunFam Transcription factor bHLH130 family 321 389 - -
Stsc272425g00001 392 MobiDBLite consensus disorder prediction 265 283 - -
Stsc272425g00001 392 Pfam Helix-loop-helix DNA-binding domain 325 371 IPR011598 GO:0046983
Stsc272425g00001 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 370 IPR011598 GO:0046983
Stsc272425g00001 392 MobiDBLite consensus disorder prediction 90 128 - -
Stsc272425g00001 392 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 98 385 - -
Stsc272425g00001 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 382 IPR036638 GO:0046983
Stsc272425g00001 392 SMART finulus 326 376 IPR011598 GO:0046983
Stsc272425g00001 392 MobiDBLite consensus disorder prediction 181 200 - -
Stsc272425g00001 392 MobiDBLite consensus disorder prediction 178 200 - -
Stsc272425g00001 392 MobiDBLite consensus disorder prediction 263 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272425g00001 Stsc-Chr272425 2225 5161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272425g00001 11 388 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.052 9.65e-71 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc272425g00001 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272425g00001 - - gmx:100805812 457.603