Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272423g00007 ATGAAAAAAGAGACAAAACAGAATGGTGAAAGCTCTGCAGATTCTGGAAGGCAATCAAGCCAACGGTTTTCATTCCTGAGGTCTTCAAGCCGAGGATCATCCGAAAATGGAAACAGCAATCATCACTCATTCAGAATATCAGATGCTATGACATCAGAAGGAGGAAATGAAGTTCTTCCTTCATCAGAATTATCACCTATACCTCAAGAAGTTCCATTTTTCAGGCTTGCTTATCTTAACAAACCTGAAATCCCAGTTTTGCTCATAGGGACATTCATAGCAGTTATATGTGGGACTATTTCACCTGCTCTGGGGCTAGTTGTCTCGAAAATGATCAATACTTTCTTTGAACCTGCAGATAAACTTGGCAAAGATTCAAGGCTTTGGGCATTAGTATTTTTTGCCTTTAGTGTGGCTGCATTCATATTTCATCCATTGAGGTCCTACTTCTTTTCTGTGGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTTATGTGTTTCGATAAGATAATTCACATGGAAGTAGGATGGTTTGACAAAGCTGAGAATTCTAGTGGAGCTCTTGGAGCAAGGTTGGCAGTTGATGCTGCCTCACTTCGCGCTTTGTTCGGGGATGCACTTGGTGTGCTGGTTCAAGATGCTTCCACTGCAATTACAGCCTTGGTGATTGCATTCGAGGCGAATTGGCAGCTTGCTCTCATTATCCTTGCTATGGTGCCTCTTCTGTTATTAAATGGACATTTACAAATCAGATCCATGAGAGGATTCAGAGCAAATGCAAAGAAACAATATGAGGAAGCAAGTCAAGTAGCAAATGATGCAGTAGGGAATATCAGAACAGTTGCCTCTTTCTGTGCTGAAGAGAAGGTAATGGAGTTATATCAGAAGAAATGTGAAGGACCAATGCAAACAGGTATAAGACAAGGTTTAGTCAGTGGAAGTAGTTATGGACTATCATACTTCTTTCTGTTCTGTGTCTACGGAGCTAGTTTCTACGCCGGTGGCCGGCTTGTTGAGGAAGGCAAAACAACAATGTCTGAAGTTTTCCGGGTATTCTTTTGTCTTACAATGGCTGCTATAACATTATCTCAGTCCAGCCTATTGGCCCCGGGCGCAAGCAAAGCGAAAAGCTCAGCTGCTTCTGTGTTTGCCATTCTTGATCAGAAATCTAAAGTAGACTCCAGTGATAAGTCTGGAATCACATTGCAAGATGTGAAGGGAGAGATTATGTTCAAGCATGTAGCTTTCAAGTATCCAACTAGGCCTAATGTTCATGTATTCAGAGATCTTTCCTTAACTATTCACTCAGGACAGACAGTGGCACTGGTTGGAGAAAGTGGAAGTGGGAAGTCAACAGTGATATCATTGCTGCAGAGATTTTATGAGCCGGATTCAGGTGAGATAACAGTGGATGGAACAGAAATCAAGAAGCTGCAACTGAAATGGTATAGGGAGCAAATGGGGCTAGTAAGCCAGGAGCCTGTGTTGTTCAATGACACCATTAGAGCCAACATAGCATATGGAAAGGGAGGGAATGCAACAGAAGCAGAAATTGTTGCTGCTGCAGAACTTGCTAATGCTCACAAATTCGTTAGCAGTTTGCACAAGGGTTATGAGACAATAGTGGGAGAGAGAGGGATTCAGCTATCAGGGGGTCAGAAGCAGAGGGTGGCAATAGCAAGAGCAATAGTGAAGAGTCCAAAGATATTGCTACTAGATGAAGCAACAAGTGCACTTGATGCTGAGTCTGAGAAGGTGGTTCAGGATGCACTTGACAGGGTTATGGTGGACAGAACCACCATTGTTGTGGCACATAGGTTATCAACCATTAAGGGTGCACATTTGATTGCTGTGGTTAAGAATGGTGTCATTGCTGAGAAAGGGAAACATGCTGCTTTGCTCAAAAAGGGTGGCACCTATGCTTCCTTAGTAGCATTCTTCACAACTTCTAATTCATCTTAA 1962 0.4266 MKKETKQNGESSADSGRQSSQRFSFLRSSSRGSSENGNSNHHSFRISDAMTSEGGNEVLPSSELSPIPQEVPFFRLAYLNKPEIPVLLIGTFIAVICGTISPALGLVVSKMINTFFEPADKLGKDSRLWALVFFAFSVAAFIFHPLRSYFFSVAGSKLIKRIRLMCFDKIIHMEVGWFDKAENSSGALGARLAVDAASLRALFGDALGVLVQDASTAITALVIAFEANWQLALIILAMVPLLLLNGHLQIRSMRGFRANAKKQYEEASQVANDAVGNIRTVASFCAEEKVMELYQKKCEGPMQTGIRQGLVSGSSYGLSYFFLFCVYGASFYAGGRLVEEGKTTMSEVFRVFFCLTMAAITLSQSSLLAPGASKAKSSAASVFAILDQKSKVDSSDKSGITLQDVKGEIMFKHVAFKYPTRPNVHVFRDLSLTIHSGQTVALVGESGSGKSTVISLLQRFYEPDSGEITVDGTEIKKLQLKWYREQMGLVSQEPVLFNDTIRANIAYGKGGNATEAEIVAAAELANAHKFVSSLHKGYETIVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGAHLIAVVKNGVIAEKGKHAALLKKGGTYASLVAFFTTSNSS 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272423g00007 653 Gene3D - 399 645 IPR027417 -
Stsc272423g00007 653 SMART AAA_5 436 629 IPR003593 GO:0016887
Stsc272423g00007 653 ProSitePatterns ABC transporters family signature. 549 563 IPR017871 GO:0005524|GO:0016887
Stsc272423g00007 653 CDD ABC_MTABC3_MDL1_MDL2 409 644 - -
Stsc272423g00007 653 MobiDBLite consensus disorder prediction 11 45 - -
Stsc272423g00007 653 Gene3D ABC transporter type 1, transmembrane domain 69 375 IPR036640 GO:0005524|GO:0016020
Stsc272423g00007 653 Gene3D ABC transporter type 1, transmembrane domain 376 398 IPR036640 GO:0005524|GO:0016020
Stsc272423g00007 653 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 88 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272423g00007 653 CDD ABC_6TM_Pgp_ABCB1_D2_like 77 392 - -
Stsc272423g00007 653 PANTHER ABC TRANSPORTER B FAMILY 66 646 IPR039421 -
Stsc272423g00007 653 FunFam ABC transporter B family member 1 399 648 - -
Stsc272423g00007 653 Pfam ABC transporter 428 577 IPR003439 GO:0005524
Stsc272423g00007 653 FunFam ABC transporter B family member 1 67 375 - -
Stsc272423g00007 653 MobiDBLite consensus disorder prediction 1 45 - -
Stsc272423g00007 653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 645 IPR027417 -
Stsc272423g00007 653 Pfam ABC transporter transmembrane region 87 358 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272423g00007 653 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 409 646 IPR003439 GO:0005524
Stsc272423g00007 653 SUPERFAMILY ABC transporter transmembrane region 75 389 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272423g00007 Stsc-Chr272423 17648 20767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272423g00007 10 644 Calmodulin-binding Proteins AT2G36910 41.538 4.02e-162 497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272423g00007 K05658 - gmx:100777713 856.67