Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272423g00006 ATGGTGGTTGAGGAAAGTTTGAATGGAGATATCACTTCATGTGAGATGACAGGAACAGCAAGTCATACACAGATTCCGGATCAAGAAATGAAGGGAAGGGAGGAGGCTCCAGAGAAGAACAAGTCCAAAGCTAAAAGCAATAAAACAGTACCCTTTTACAAGCTTTTCTCATTTGCAGATTCTTGGGATCATTTTCTGATGTTTGTTGGGACAATTAGTGCAGTTGGGAATGGAGTATCCATCCCTTTAATGAGTGTACTAATTGGAGATACCATTGATGCTTTTGGACTAAATGGTAGCAATAAACAAGTTGCTCATGAAGTTTCCAAGGTGTCTTTGAAGTTTCTGTGCTTGGGTATAGCTGTCTTTTTAGCAGGATTTCTTCAGGTTGCTTGTTGGGTGATCACTGGGGAGAGACAAGCTGCAAGAATAAGAGGCTTATACCTCAAAGCGATTCTGAGACAAGACGTTGGCTTCTTCGACAAGGAAACTAACACCGGAGAGGTTATTGGAAGGATGTCAGGTGACACAATTCTTGTTCAAGAAGCCATGGGGGAAAAGGTAGGACAGTTGATACAGTATGTGTCAAACTTTTCAGGAGGGCTTACCATAGGATTCATCAAGGGTTGGCTTCTAACCCTTGTCCTGCTATCTTCCCTGCCTCCTCTTGTCTTTGCTGGTTCTTTAATGACTTTCGCTTTCGCGAAGATGGCGTCTCGTGGACAAGCAGCATATTCTGAAGCAGCAACTATAGTTGACAGGACAATTGGTTCAATTAGAACTGTAGCATCATTTACCGGTGAGGAACAAGCTATAGCTTTATACAATGAATCCTTAAACAAAGCATATAGGAGTGGTGTGCAAGAAGGAGTAGCTGCTGGATTAGGCCTCGGTTCGCTTCGGTTGATTGCTTTCAGCACTTATGCTTTGGGTGTATGGTTTGGAGGGAAGATGGTGCTAGAGAAAGGATATACAGGAGGTGAAGTCATGAGTGTGTTTTTTGCAGTATCAATTGGCTCATTGACTCTGGGGCAGGCATCTCCATGCTTAACTGCAATTGCTTCAGGACAAGCCGCGGCCTATAAAATTTTTGAAACAATAAATAGACAGCCGGATATTGATTCTTATGACACGGCTGGTCGGATTCTAGATGATATTTCCGGAGATATAGAACTTAGAGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAACTCATATTCAATGGATTTTCCATTTCAATATCAAGTGGCAGTACTGCAGCTTTGGTAGGACAAAGTGGGAGTGGGAAATCAACAGTTATTAGTTTGATAGAGAGATTTTATGATCCACAGGCTGGTGAAGATGGTGCAACTGATGAAGAAATCAAAGCTGCAGCAGAACTTGCTAATGCTGCTAGATTCATTGATAAATTCCCCCATGGACTTTACACAATGGTTGGTGAGCATGGAACTCAGCTTTCTGGAGGACAAAAGCAAAGGATTGCTATAGCAAGAGCAATTCTGAAAGATCCTAGAATCTTGTTACTTGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAGTGGTTCAAGAGACACTGGACAGAATAATGATTGACAGAACAACTGTTATCGTGGCGCATCGCTTAATCACAATAAGAAATGCTGACACAATTGCTGTTATTCATCAAGGAAAAGTAGTAGAAAAAGGTAGAGATAGCTAG 1710 0.4187 MVVEESLNGDITSCEMTGTASHTQIPDQEMKGREEAPEKNKSKAKSNKTVPFYKLFSFADSWDHFLMFVGTISAVGNGVSIPLMSVLIGDTIDAFGLNGSNKQVAHEVSKVSLKFLCLGIAVFLAGFLQVACWVITGERQAARIRGLYLKAILRQDVGFFDKETNTGEVIGRMSGDTILVQEAMGEKVGQLIQYVSNFSGGLTIGFIKGWLLTLVLLSSLPPLVFAGSLMTFAFAKMASRGQAAYSEAATIVDRTIGSIRTVASFTGEEQAIALYNESLNKAYRSGVQEGVAAGLGLGSLRLIAFSTYALGVWFGGKMVLEKGYTGGEVMSVFFAVSIGSLTLGQASPCLTAIASGQAAAYKIFETINRQPDIDSYDTAGRILDDISGDIELREVCFSYPTRPDELIFNGFSISISSGSTAALVGQSGSGKSTVISLIERFYDPQAGEDGATDEEIKAAAELANAARFIDKFPHGLYTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDRIMIDRTTVIVAHRLITIRNADTIAVIHQGKVVEKGRDS 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272423g00006 569 Gene3D ABC transporter type 1, transmembrane domain 54 379 IPR036640 GO:0005524|GO:0016020
Stsc272423g00006 569 PANTHER ABC TRANSPORTER B FAMILY 28 448 IPR039421 -
Stsc272423g00006 569 SUPERFAMILY ABC transporter transmembrane region 54 374 IPR036640 GO:0005524|GO:0016020
Stsc272423g00006 569 Gene3D - 448 567 IPR027417 -
Stsc272423g00006 569 Gene3D - 380 447 IPR027417 -
Stsc272423g00006 569 Pfam ABC transporter 475 515 IPR003439 GO:0005524
Stsc272423g00006 569 MobiDBLite consensus disorder prediction 10 26 - -
Stsc272423g00006 569 FunFam ABC transporter B family member 9 54 385 - -
Stsc272423g00006 569 CDD ABC_6TM_Pgp_ABCB1_D1_like 67 363 - -
Stsc272423g00006 569 MobiDBLite consensus disorder prediction 27 43 - -
Stsc272423g00006 569 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 68 355 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272423g00006 569 MobiDBLite consensus disorder prediction 1 43 - -
Stsc272423g00006 569 ProSitePatterns ABC transporters family signature. 487 501 IPR017871 GO:0005524|GO:0016887
Stsc272423g00006 569 Pfam ABC transporter 409 458 IPR003439 GO:0005524
Stsc272423g00006 569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 382 567 IPR027417 -
Stsc272423g00006 569 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 390 569 IPR003439 GO:0005524
Stsc272423g00006 569 Pfam ABC transporter transmembrane region 67 340 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272423g00006 569 SMART AAA_5 417 547 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272423g00006 Stsc-Chr272423 15113 17508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272423g00006 39 569 Calmodulin-binding Proteins AT2G36910 33.160 1.17e-87 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272423g00006 K05658 - gmx:100777713 818.535