Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272423g00005 ATGAGATCTCTAAGCCATCAAGAATCATTTGGTGTTGGAAACAGCGGCCGCCACTCATTCACAGCGCCTTTTCCTGTTCCTACAGCAGTTGGCGTCATGGAACCGCCACCTGAAGCTACTACTTCTTCAACTGTCTCACCTTCGCCGCCGGAAGTTCCTCTTTCTCGTCTCGCTACTCTAAACAAGCCTGAGATTCCAGTCTTACTGATGGGATCAGTAGCTGCAGTTATAAGTGGATTGATATTTCCGGCTTTCGGCCTAATACTTTCGAAAATGATCACAATTTTCTACAAGCCAGCTCACGAGCTTCGCCACGATTCGAGAGTTTGGGCACTGGTGTTTGTAGGACTTGGAGCACTGTCATTGTTTGTGTATCCTTCTAGATTCTACCTTTTCGCTGTCGCCGGGGGTAAGTTGATTAAGAGGATCCGGGAGATGTGTTTTGAGAAAGTGGTTAACATGGAGGTGAGCTGGTTCGATGAAGCTGATCATTCTAGTGGAGCCATTGGTGCTAGGCNNNNNNNNNNAACTGACGCGGCTTCGATTCGAGCTATAGTTGGAGATGCACTTGGCTTGATGGTTGAAAACATAGCTACAGCAGCTGCTGCATTAGTAATTTCTTTTGAAGCTTGCTGGGAACTTGCTCTTGTAGTTCTTGCTTTGGCGCCTCTGTTAGGTCTAAATGGATACGTGCAGTTCAAGTTCTTGACTGGATTCAGCTCTGATGCAAAGAAATTGTATGAGGAAGCAAGCCAAGTGGCAAATGATGCTGTAGGGAGTATTAGAACTGTTGCTTCCTTCTGTGCTGAAGAGAAGGTGATGGACTTATACCGCGAAAAATGCGAAGGGCCGATCAAGACGGGGATAAGGCGGGGAGTAATCAGTGGTGTAGGTTTTGGATTATCATTCTTCATGATGTATTGTGTTTATGCAACTAGTTTCTATGCCGGAGCTCGGCTCGTGGATGATGGAAAAGCAACATTCTCAGATGTCTTTAGAGTCTTCTTTGCTCTAAGCATGGCTGCTATTGGAATCTCTCAATCTGGCTCCTTAGTCCCTGACTCGACCAAAGCAAAAAGTGCTGCAGCTTCTATTTTCGCCATTCTTGATCGAAAATCGCGAATAGACCCCAGTGATGAATCAGGAATAACCTATGAAGCTAAGGGAGAAATTGAACTTCACCATGTCAGTTTCAAGTATCCAACTAGGCCTGATGTTCAAATATTCAGAGATCTTAACTTGACCATTCATAGTGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATAGCATTGCTACAAAGATTTTATGACCCTGACTCAGGTCACATTACGCTTGATGGAAAGGATATCCAAACACTTCAAGTTAAGTGGCTAAGGCAACAGACGGGTTTGGTTAGCCAAGAGCCTGTGTTGTTCAACGACACGATCCGAGCCAACATCGCTTATGGAAAAGGAGGAGATGCAACAGAAGCAGAGATCATAGCTGCAGCGGAACTTGCTAATGCTCACAAGTTCATTAGTAGTTTACAGCAGGGCTACGACACAATTGTAGGCGAGCGAGGTGTTCAGTTATCCGGTGGCCAGAAGCAGCGAGTGGCGATCGCAAGAGCCATAGTTAAGAATCCAAAGATATTGCTTCTGGATGAAGCAACAAGTGCACTTGATGCTGAGTCTGAGAAAGTGGTTCAAGATGCACTTGACAGGGTTATGGTGGACAGAACCACCATTGTTGTGGCACATAGACTATCCACAATCAGAGGTGCTGATTTGATTGCAGTGTTTAAGAATGGTGTTATTGCAGAGAAAGGTAAGCATGAAGCATTGCTCAACAAGGGAGGTGACTATGCTTCATTGGTAGCATTGCACACAAGTGCTTCATCTTAG 1905 0.4509 MRSLSHQESFGVGNSGRHSFTAPFPVPTAVGVMEPPPEATTSSTVSPSPPEVPLSRLATLNKPEIPVLLMGSVAAVISGLIFPAFGLILSKMITIFYKPAHELRHDSRVWALVFVGLGALSLFVYPSRFYLFAVAGGKLIKRIREMCFEKVVNMEVSWFDEADHSSGAIGARXXXXTDAASIRAIVGDALGLMVENIATAAAALVISFEACWELALVVLALAPLLGLNGYVQFKFLTGFSSDAKKLYEEASQVANDAVGSIRTVASFCAEEKVMDLYREKCEGPIKTGIRRGVISGVGFGLSFFMMYCVYATSFYAGARLVDDGKATFSDVFRVFFALSMAAIGISQSGSLVPDSTKAKSAAASIFAILDRKSRIDPSDESGITYEAKGEIELHHVSFKYPTRPDVQIFRDLNLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGHITLDGKDIQTLQVKWLRQQTGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIRGADLIAVFKNGVIAEKGKHEALLNKGGDYASLVALHTSASS 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272423g00005 634 FunFam ABC transporter B family member 1 382 630 - -
Stsc272423g00005 634 Pfam ABC transporter transmembrane region 69 340 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272423g00005 634 Pfam ABC transporter 410 559 IPR003439 GO:0005524
Stsc272423g00005 634 CDD ABC_6TM_Pgp_ABCB1_D2_like 60 375 - -
Stsc272423g00005 634 FunFam ABC transporter B family member 1 48 355 - -
Stsc272423g00005 634 Gene3D ABC transporter type 1, transmembrane domain 50 358 IPR036640 GO:0005524|GO:0016020
Stsc272423g00005 634 SUPERFAMILY ABC transporter transmembrane region 56 376 IPR036640 GO:0005524|GO:0016020
Stsc272423g00005 634 ProSitePatterns ABC transporters family signature. 531 545 IPR017871 GO:0005524|GO:0016887
Stsc272423g00005 634 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 69 357 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272423g00005 634 MobiDBLite consensus disorder prediction 28 50 - -
Stsc272423g00005 634 FunFam Uncharacterized protein 356 382 - -
Stsc272423g00005 634 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 108 625 IPR039421 -
Stsc272423g00005 634 Gene3D ABC transporter type 1, transmembrane domain 359 631 IPR036640 GO:0005524|GO:0016020
Stsc272423g00005 634 Gene3D - 382 630 IPR027417 -
Stsc272423g00005 634 SMART AAA_5 418 611 IPR003593 GO:0016887
Stsc272423g00005 634 CDD ABC_MTABC3_MDL1_MDL2 391 626 - -
Stsc272423g00005 634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 628 IPR027417 -
Stsc272423g00005 634 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 391 628 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272423g00005 Stsc-Chr272423 8928 11975 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272423g00005 22 632 Calmodulin-binding Proteins AT2G36910 39.384 5.25e-133 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272423g00005 K05658 - gmx:100776122 981.089