Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272423g00004 ATGCAGTGCTTCCCTAACTATACTATGAATATCAGGTCTCTTGGTCAGGCATCTCCGAGCCTGAGCGCGTTTGCAGCAGGGCAAGCGGCGGCGTTTAAGATGTTTGAGACTATCAAGAGGAAGCCGGAAATCGATGCTTCGGATCCGAACGGTCTAAAGCTGGATGACATTCGGGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGCTATCCAACAAGGCCAGATGAACTGATATTCAATGGCTTTTCGCTTTCGATACCGAGTGGAACTACTGCAGCTCTGGTAGGACAGAGTGGGAGTGGGAAATCAACAGTTGTTAGTTTGATTGAGAGATTCTATGATCCACAGGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAAAGAATTTCAGCTGAAATGGATCAGGCAGAAAATTGGCCTAGTTAGCCAGGAGCCAGTTCTCTTTGCTAGTAGCATTAAAGAGAACATCGCTTATGGAAAAGAAGAAGCAACCGATGAAGAAATCCGAGCAGCAGCGGAACTCGCTAATGCTGCAAAATTCATAGACAAGCTTCCTCAGGGTTTGGATACCATGGTTGGCGAGCATGGAACTCAGCTCTCTGGAGGTCAAAAGCAGAGAGTTGCAATAGCAAGAGCGATTCTGAAAGATCCAAGAATCTTACTTCTTGATGAAGCTACAAGTGCGCTTGATGCCGAATCTGAGAGGATCGTACAGGAGGCATTGGACAGAATAATGGTGAACCGAACAACTGTGATCGTCGCGCATCGATTAAGCACTATAAGGAATGCTGATACCATTGCTGTTATTCATCAAGGAAAAATAGTAGAAAGAGGTTCGCATGCTGAGCTCACCGGTGATCCCGACGGAGCCTATAGCCAACTAATTCGGCTTCAAGAAATTCATGGCGCAAATTACAAAGACAAGCCAGAAAGTATTTTACACTCTGGAAGAGTATCTTCTTCGATAAGATCTTCTTCGATGAGATCTCTAAGCCATCAAGAATCATTTGGTGTTGGAAACAGCGGCCGCCACTCATTCACAGCGCCTTTTCCTGTTCCTACAGCAGTTGGCGTCATGGAACCGCCACCTGAAGCTACTACTTCTTCAACTGTCTCACCTTCGCCGCCGGAAGTTCCTCTTTCTCGTCTCGCTACTCTAAACAAGCCTGAGATTCCAGTCTTACTGATGGGATCAGTAGCTGCAGTTATAAGTGGATTGATATTTCCGGCTTTCGGCCTAATACTTTCGAAAATGATCACAATTTTCTACAAGCCAGCTCACGAGCTTCGCCACGATTCGAGAGTTTGGGCACTGGTGTTTGTAGGACTTGGAGCACTGTCATTGTTTGTGTATCCTTCTAGATTCTACCTTTTCGCTGTCGCCGGGGGTAAGTTGATTAAGAGGATCCGGGAGATGTGTTTTGAGAAAGTGGTTAACATGGAGGTGAGCTGGTTCGATGAAGCTGATCATTCTAGTGGAGCCATTGGTGCTAGGCNNNNNNNNNNAACTGACGCGGCTTCGATTCGAGCTATAGTTGGAGATGCACTTGGCTTGATGGTTGAAAACATAGCTACAGCAGCTGCTGCATTAGTAATTTCTTTTGAAGCTTGCTGGGAACTTGCTCTTGTAGTTCTTGCTTTGGCGCCTCTGTTAGGTCTAAATGGATACGTGCAGTTCAAGTTCTTGACTGGATTCAGCTCTGATGCAAAGAAATTGTATGAGGAAGCAAGCCAAGTGGCAAATGATGCTGTAGGGAGTATTAGAACTGTTGCTTCCTTCTGTGCTGAAGAGAAGGTGATGGACTTATACCGCGAAAAATGCGAAGGGCCGATCAAGACGGGGATAAGGCGGGGAGTAATCAGTGGTGTAGGTTTTGGATTATCATTCTTCATGATGTATTGTGTTTATGCAACTAGTTTCTATGCCGGAGCTCGGCTCGTGGATGATGGAAAAGCAACATTCTCAGATGTCTTTAGAGTCTTCTTTGCTCTAAGCATGGCTGCTATTGGAATCTCTCAATCTGGCTCCTTAGTCCCTGACTCGACCAAAGCAAAAAGTGCTGCAGCTTCTATTTTCGCCATTCTTGATCGAAAATCGCGAATAGACCCCAGTGATGAATCAGGAATAACCTATGAAGCTAAGGGAGAAATTGAACTTCACCATGTCAGTTTCAAGTATCCAACTAGGCCTGATGTTCAAATATTCAGAGATCTTAACTTGACCATTCATAGTGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATAGCATTGCTACAAAGATTTTATGACCCTGACTCAGGTCACATTACGCTTGATGGAAAGGATATCCAAACACTTCAAGTTAAGTGGCTAAGGCAACAGACGGGTTTGGTTAGCCAAGAGCCTGTGTTGTTCAACGACACGATCCGAGCCAACATCGCTTATGGAAAAGGAGGAGATGCAACAGAAGCAGAGATCATAGCTGCAGCGGAACTTGCTAATGCTCACAAGTTCATTAGTAGTTTACAGCAGGGCTACGACACAATTGTAGGCGAGCGAGGTGTTCAGTTATCCGGTGGCCAGAAGCAGCGAGTGGCGATCGCAAGAGCCATAGTTAAGAATCCAAAGATATTGCTTCTGGATGAAGCAACAAGTGCACTTGATGCTGAGTCTGAGAAAGTGGTTCAAGATGCACTTGACAGGGTTATGGTGGACAGAACCACCATTGTTGTGGCACATAGACTATCCACAATCAGAGGTGCTGATTTGATTGCAGTGTTTAAGAATGGTGTTATTGCAGAGAAAGGTAAGCATGAAGCATTGCTCAACAAGGGAGGTGACTATGCTTCATTGGTAGCATTGCACACAAGTGCTTCATCTTAG 2886 0.4522 MQCFPNYTMNIRSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDASDPNGLKLDDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQAGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFASSIKENIAYGKEEATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHAELTGDPDGAYSQLIRLQEIHGANYKDKPESILHSGRVSSSIRSSSMRSLSHQESFGVGNSGRHSFTAPFPVPTAVGVMEPPPEATTSSTVSPSPPEVPLSRLATLNKPEIPVLLMGSVAAVISGLIFPAFGLILSKMITIFYKPAHELRHDSRVWALVFVGLGALSLFVYPSRFYLFAVAGGKLIKRIREMCFEKVVNMEVSWFDEADHSSGAIGARXXXXTDAASIRAIVGDALGLMVENIATAAAALVISFEACWELALVVLALAPLLGLNGYVQFKFLTGFSSDAKKLYEEASQVANDAVGSIRTVASFCAEEKVMDLYREKCEGPIKTGIRRGVISGVGFGLSFFMMYCVYATSFYAGARLVDDGKATFSDVFRVFFALSMAAIGISQSGSLVPDSTKAKSAAASIFAILDRKSRIDPSDESGITYEAKGEIELHHVSFKYPTRPDVQIFRDLNLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGHITLDGKDIQTLQVKWLRQQTGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIRGADLIAVFKNGVIAEKGKHEALLNKGGDYASLVALHTSASS 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272423g00004 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 299 IPR027417 -
Stsc272423g00004 961 Pfam ABC transporter 80 228 IPR003439 GO:0005524
Stsc272423g00004 961 Gene3D - 86 307 IPR027417 -
Stsc272423g00004 961 PANTHER ABC TRANSPORTER B FAMILY 370 955 IPR039421 -
Stsc272423g00004 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 711 955 IPR027417 -
Stsc272423g00004 961 FunFam ABC transporter B family member 1 51 300 - -
Stsc272423g00004 961 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 61 297 IPR003439 GO:0005524
Stsc272423g00004 961 CDD ABC_6TM_Pgp_ABCB1_D2_like 387 702 - -
Stsc272423g00004 961 Pfam ABC transporter transmembrane region 396 667 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272423g00004 961 FunFam ABC transporter B family member 1 375 682 - -
Stsc272423g00004 961 MobiDBLite consensus disorder prediction 358 377 - -
Stsc272423g00004 961 Pfam ABC transporter 737 886 IPR003439 GO:0005524
Stsc272423g00004 961 ProSitePatterns ABC transporters family signature. 858 872 IPR017871 GO:0005524|GO:0016887
Stsc272423g00004 961 SUPERFAMILY ABC transporter transmembrane region 383 703 IPR036640 GO:0005524|GO:0016020
Stsc272423g00004 961 CDD ABC_MTABC3_MDL1_MDL2 718 953 - -
Stsc272423g00004 961 FunFam ABC transporter B family member 1 709 957 - -
Stsc272423g00004 961 Gene3D ABC transporter type 1, transmembrane domain 1 85 IPR036640 GO:0005524|GO:0016020
Stsc272423g00004 961 Gene3D - 710 960 IPR027417 -
Stsc272423g00004 961 FunFam Uncharacterized protein 683 709 - -
Stsc272423g00004 961 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 718 955 IPR003439 GO:0005524
Stsc272423g00004 961 ProSitePatterns ABC transporters family signature. 200 214 IPR017871 GO:0005524|GO:0016887
Stsc272423g00004 961 CDD ABC_MTABC3_MDL1_MDL2 61 299 - -
Stsc272423g00004 961 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 396 684 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc272423g00004 961 SMART AAA_5 745 938 IPR003593 GO:0016887
Stsc272423g00004 961 SMART AAA_5 88 274 IPR003593 GO:0016887
Stsc272423g00004 961 Gene3D ABC transporter type 1, transmembrane domain 357 707 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272423g00004 Stsc-Chr272423 7716 11950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272423g00004 349 959 Calmodulin-binding Proteins AT2G36910 39.384 1.74e-129 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272423g00004 K05658 - gmx:100776122 1479.54