Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272414g00001 ATGGAAACCACTGAAAAGACCCCTCAGAAAACAACAACAACAACGAGTAGTGGTGGGTTGAATCTTAAGGCCACTGAACTGAGACTTGGGTTGCCAGGTTCAGAATCACCAGAAAGAGATGAAGATGGTGGTGGTGGTGTGAAGGGTGGGGCCATAAGGGGTTTCTGTTTCTCATCAGATGGCATTGATGGGAAGTGGAATCTCTCTGAAATGGGTATTGGTAAAGATGTTGGCTTGTTCTCTCCTCCAACTCCTAGGGAAAGAGAACAAGCATCTGTTATCAAACAGAAGAAGCCTCAGATATCTTCTGCAAGAGAACAGGTAGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCTACAACTCAGAAGAATGATGATGTTGATGCATCACAAGCCAAATCCAGTAGTAATTGCCTTTATGTGAAAGTGAGCATGGATGGTGCTCCATTCTTGAGGAAAGTTGATCTCAAAAACTTTGCTACTTATAAGGATCTCTCTTCAGCCCTCCACAGCATGTTCGCTTGCTTTACAATCAGTCAATGTGGAACTCATGGAGTTTCTAATAGAGACGAGTTGAGTGAAAGTAAGTTGATGGATCTGCTTCATGGCTCAGAATATGTTCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTAATTCTTGCAAGAGGTTGAGAATAATGAAGAGTTCTGAAGCTATTGGACTAGCACCAAGAGCCATGGAAAAGTGTAAAAGTCTCAACTAG 789 0.4322 METTEKTPQKTTTTTSSGGLNLKATELRLGLPGSESPERDEDGGGGVKGGAIRGFCFSSDGIDGKWNLSEMGIGKDVGLFSPPTPREREQASVIKQKKPQISSAREQVVGWPPIRSFRKNSMATTQKNDDVDASQAKSSSNCLYVKVSMDGAPFLRKVDLKNFATYKDLSSALHSMFACFTISQCGTHGVSNRDELSESKLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTNSCKRLRIMKSSEAIGLAPRAMEKCKSLN 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272414g00001 262 SUPERFAMILY CAD & PB1 domains 138 243 - -
Stsc272414g00001 262 MobiDBLite consensus disorder prediction 1 47 - -
Stsc272414g00001 262 Pfam AUX/IAA family 25 253 IPR033389 -
Stsc272414g00001 262 Gene3D - 136 256 - -
Stsc272414g00001 262 MobiDBLite consensus disorder prediction 1 22 - -
Stsc272414g00001 262 ProSiteProfiles PB1 domain profile. 142 244 IPR000270 GO:0005515
Stsc272414g00001 262 FunFam Auxin-responsive protein 137 254 - -
Stsc272414g00001 262 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 249 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272414g00001 Stsc-Chr272414 14524 17129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272414g00001 144 247 B3 DNA Binding Superfamily AT1G19220 30.769 3.11e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc272414g00001 AUX_IAA 8.3e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272414g00001 K14484 - gmx:100803754 327.405