Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272413g00008 ATGGTTTTCTCTTCTATTCCAGTCTATGTAGATCCTCCCAATTGGCACCAGCAAGCGAATCATCATCAAGTAAACGTCAATGATAACCCTCAGCTGCTTCCGCCGCTTCCCCCACAGGCAACTGGACCTGTGGGAGGAGGCAGTGGAATTGGCTCAATCAGGCCCGGCTCGATGGCTGATCGAGCCAGGCTAGCAAAGATACCACCTCCGGAGGCTGCACTCAAGTGTCCTCGATGCGATTCGACGAACACCAAATTCTGCTACTTCAACAATTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCCTGTAGGCGTTACTGGACAAGAGGCGGGGCTCTGAGGAATGTTCCGGTAGGCGGCGGATGCCGCCGTAACAAGAAGAACAAGAGAAGTAATAGCCGCTCCAAATCTCCACCAAACAATAATAACAGCAATCATCAGAAGCAACAAATTTCGAGTGCAATTCCTTCAAATCATGAGTTTATTGGTCATCCTCATCAGTTATCTCATCATCAACAACCACCAAACCTTCCTTTCATGGCTTCTCTCCAGAATCACCTTAGCCGCTATGGAGGGGGAGTTGTTGCAGCAAACATGGGTCTGAGCTTAACAGATCATCATCATCCTCATCCTCACATGGGGTTTGTTGGTAATTCTGGTTCTTCTGCTTCTGCTATAGCTGCCAGTGGAGTGGATCAGTGGCGGTTGCAGCAGCAGTTTCCGTTCTTAAACGGTTTTGATTCATCAAATCCTTCTTCAGCTGCAGCATCATCATACCCTACTAATAATACTTTTCATCATCATCAAAATGAAGGTATTGCTGCTGAAGTTGCTGACATAGCTGGTGGAAATTCTAGGGTTAATAATCAGATGTCACCACCAGTGAAGATGGAAGAAAACGGAGCCATGAATTTGTCAAGAACAACACCAGCAGCAACCATGAATAATAATGTCTCTGAAAATAATCAATACTATTCTTGGACAACAGATATGTCAGCTCTTGCTTCTTCTTCTTCCACTCATAATCTCTTATAA 1038 0.4595 MVFSSIPVYVDPPNWHQQANHHQVNVNDNPQLLPPLPPQATGPVGGGSGIGSIRPGSMADRARLAKIPPPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKNKRSNSRSKSPPNNNNSNHQKQQISSAIPSNHEFIGHPHQLSHHQQPPNLPFMASLQNHLSRYGGGVVAANMGLSLTDHHHPHPHMGFVGNSGSSASAIAASGVDQWRLQQQFPFLNGFDSSNPSSAAASSYPTNNTFHHHQNEGIAAEVADIAGGNSRVNNQMSPPVKMEENGAMNLSRTTPAATMNNNVSENNQYYSWTTDMSALASSSSTHNLL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272413g00008 345 MobiDBLite consensus disorder prediction 115 180 - -
Stsc272413g00008 345 ProSitePatterns Zinc finger Dof-type signature. 76 112 IPR003851 GO:0003677|GO:0006355
Stsc272413g00008 345 MobiDBLite consensus disorder prediction 135 158 - -
Stsc272413g00008 345 ProSiteProfiles Zinc finger Dof-type profile. 74 128 IPR003851 GO:0003677|GO:0006355
Stsc272413g00008 345 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 63 267 IPR045174 GO:0003700|GO:0006355
Stsc272413g00008 345 Pfam Dof domain, zinc finger 73 128 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272413g00008 Stsc-Chr272413 32655 34531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272413g00008 8 344 C2C2-Dof Transcription Factor Family AT3G55370 37.640 4.82e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc272413g00008 zf-Dof 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272413g00008 - - aip:107629110 393.275