Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272413g00007 ATGCTCTTCAATCCGCCAGGGATATCCTCTCCTTCGGTGCTGATTGCAGTTCTTGAGAGGGAGCAAATTATGAGTAAGTTCTATGAGGTCACGGCTAGGTTGGAGCAGTCCTTGGCCGCGATTTCCTGCGATCAACTTGACATTTCAGATGAAGTTAAGGAGCAGGTTGAGCTAGTTCTTGCTCAGTTTAGAAGAGCAAAAGGGAGGGTTGATGAACCTGATATCAAGTTGTATGAGGATGTGTTGTCTCTCTACAATAATAACAGTGATGTAGCTACCAATCCTGCTGTTATTCGGCAGTTAGCTGAAAAGTTGGAGTTGATGGGAATAGCTGAGCTAACACAAGAGTCTCTTGCCTTGCATGAGATGGTGGCAGCGAGTGGTGGCGATCCGGGCGGACGCATTGAGAAGATGTCAATGCTATTGAAGAAGATAAAAGATTATGTTCAAACAGAAAATCTAGTGTATGATAATAATGTAGGAGGAAAGGGGCATTCTTCAAAATCCAGCAAACAAGTGACAAATGAAAGGAATCATCAGACTCCTGTTATCCCTGATGATTTTCGATGTCCTGTTTCTCTTGAATTGATGAAGGATCCTGTCATTGTTTCAACAGGACAGACTTATGACCGTTCTTCTATTGAGAAGTGGTTACAAGCAGGGCACAAAACATGCCCCAAAACACAGCAGAGCCTAACTAGTACTGTCCTCACTCCCAACTACGTCTTGCGAAGCCTCATAGAACAATGGTGCGAAGCAAATGGCATTGAACCACCAAAGCGATCAAGCAATCCCGAGCCTAGTAAATCAGTGTCGGCTTATGCCCCGGCTGAGCGAAGCAAGATTCAAACTCTTCTCCAAAGGCTCACTTCTGGAAATCCAGAAGACCAAAGAACTGCTGCAGGGGAGATCCGGCTTCTTGCGAAGCGCAATGCAGATAACCGTGTGGCCATTGCAGAAGCCGGTGCAATACCTCTCCTTGTTGGTCTCCTATCTGTGCCTGATTCCCGCACTCAAGAGAATGCTGTTACAGCACTTCTGAATCTTTCCATTTATGAAAACAACAAAGGAAGCATTGTATCTTCAGGGGCAATCCCAGGCATAGTTCATGTGCTTAAGAAGGGAAGCATGGAAGCTCGAGAAAATGCAGCAGCAACACTTTTCAGCCTATCAGTTATCGACGAAAACAAGGTTACAATTGGTGCTTCCGGAGCCATACCACCATTAGTAACACTTCTAAGTGAGGGTACTCAGAGGGGTAAGAAAGATGCTGCAACAGCACTCTTTAATCTATGCATTTATCAAGGGAACAAGGGAAAGGCGGTCAGGGCCGGCGCCGTTCCCACATTGATGCAACTTCTGACAGAACCTAATGGAAGCATGGTGGATGAAGCATTGGCCATTTTGGCAATACTGTCTAGCCATCCTGATGGAAAGGCTGCCATTGGTGCTGCAGAGGCAGTGCCATTTTTGGTAGAGTTTATTGCAAGTGGTTCACCAAGGAACAAAGAAAACGCGGCTGCTGTGTTGGTTCATCTTTCTTCCGGAGATCAACAATATCTAGCAAAGGCCCGAGAGCTCGACGTGATGGCTCCTTTGTTGGATTTGGCTCAAAATGGTACAGACAGAGGAAAAAGGAAGGCAGCTCAATTGCTAGAACGCATTAGCAGGTTCCTTGAGCAGCAGCAGCAAGAGCAAGAAGAGGAGCAGGAAGTGGAAGTTCAGACACAAAATGAACTGAATGATGCTGCACAACCACCTCTTATTACCAACATGGATGATACCTGA 1788 0.4597 MLFNPPGISSPSVLIAVLEREQIMSKFYEVTARLEQSLAAISCDQLDISDEVKEQVELVLAQFRRAKGRVDEPDIKLYEDVLSLYNNNSDVATNPAVIRQLAEKLELMGIAELTQESLALHEMVAASGGDPGGRIEKMSMLLKKIKDYVQTENLVYDNNVGGKGHSSKSSKQVTNERNHQTPVIPDDFRCPVSLELMKDPVIVSTGQTYDRSSIEKWLQAGHKTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGIEPPKRSSNPEPSKSVSAYAPAERSKIQTLLQRLTSGNPEDQRTAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQENAVTALLNLSIYENNKGSIVSSGAIPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGAVPTLMQLLTEPNGSMVDEALAILAILSSHPDGKAAIGAAEAVPFLVEFIASGSPRNKENAAAVLVHLSSGDQQYLAKARELDVMAPLLDLAQNGTDRGKRKAAQLLERISRFLEQQQQEQEEEQEVEVQTQNELNDAAQPPLITNMDDT 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272413g00007 595 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 364 IPR000225 GO:0005515
Stsc272413g00007 595 Pfam Armadillo/beta-catenin-like repeat 311 350 IPR000225 GO:0005515
Stsc272413g00007 595 Pfam Armadillo/beta-catenin-like repeat 394 432 IPR000225 GO:0005515
Stsc272413g00007 595 SMART Ubox_2 187 250 IPR003613 GO:0004842|GO:0016567
Stsc272413g00007 595 MobiDBLite consensus disorder prediction 159 181 - -
Stsc272413g00007 595 MobiDBLite consensus disorder prediction 561 595 - -
Stsc272413g00007 595 Pfam Neurochondrin 441 570 IPR008709 -
Stsc272413g00007 595 Gene3D - 268 589 IPR011989 -
Stsc272413g00007 595 ProSiteProfiles U-box domain profile. 183 257 IPR003613 GO:0004842|GO:0016567
Stsc272413g00007 595 PANTHER U BOX DOMAIN-CONTAINING 17 555 - -
Stsc272413g00007 595 SUPERFAMILY RING/U-box 172 259 - -
Stsc272413g00007 595 MobiDBLite consensus disorder prediction 256 277 - -
Stsc272413g00007 595 FunFam RING-type E3 ubiquitin transferase 183 257 - -
Stsc272413g00007 595 CDD RING-Ubox_PUB 185 237 IPR045210 -
Stsc272413g00007 595 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 404 446 IPR000225 GO:0005515
Stsc272413g00007 595 Coils Coil 548 579 - -
Stsc272413g00007 595 FunFam RING-type E3 ubiquitin transferase 266 562 - -
Stsc272413g00007 595 SUPERFAMILY ARM repeat 282 565 IPR016024 -
Stsc272413g00007 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 257 IPR013083 -
Stsc272413g00007 595 SMART arm_5 352 392 IPR000225 GO:0005515
Stsc272413g00007 595 SMART arm_5 311 351 IPR000225 GO:0005515
Stsc272413g00007 595 SMART arm_5 475 515 IPR000225 GO:0005515
Stsc272413g00007 595 SMART arm_5 517 557 IPR000225 GO:0005515
Stsc272413g00007 595 SMART arm_5 393 433 IPR000225 GO:0005515
Stsc272413g00007 595 SMART arm_5 434 474 IPR000225 GO:0005515
Stsc272413g00007 595 Pfam U-box domain 184 254 IPR003613 GO:0004842|GO:0016567
Stsc272413g00007 595 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 445 487 IPR000225 GO:0005515
Stsc272413g00007 595 MobiDBLite consensus disorder prediction 159 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272413g00007 Stsc-Chr272413 23084 26514 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272413g00007 9 571 U-box Gene Family AT3G46510 70.951 0.0 799
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272413g00007 - - gmx:100812160 904.434