Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272413g00006 ATGGGGGAAGGGGAGCAAGACCAAGACGACGGAGTAGTCGACACGTTAATTCAGCTGCTCAAGGAGATTGCTGCCATCTCTGATTTCCGTCCTATGCTCAAGAAGCACTATTGCAACTTGTCCAGAAGGCTCAATCTTCTCACTCCTTTGTTCCATGAGATTAAGGACTTGAAACACAACCATGCTTTCATTCCTAATCATACTTTCAAAGCCATGCTTCACTTAAGGGATGCTCTTCAATCCGCCAGGGATATCCTCTCCTTCGGTGCTGATTGCAGTAAGATTTTCATGGTTCTTGAGAGGGAGCAAATTATGAGTAAGTTCTATGAGGTCACGGCTAGGTTGGAGCAGTCCTTGGCCGCGATTTCCTGCGATCAACTTGACATTTCAGATGAAGTTAAGGAGCAGGTTGAGCTAGTTCTTGCTCAGTTTAGAAGAGCAAAAGGGAGGGTTGATGAACCTGATATCAAGTTGTATGAGGATGTGTTGTCTCTCTACAATAATAACAGTGATGTAGCTACCAATCCTGCTGTTATTCGGCAGTTAGCTGAAAAGTTGGAGTTGATGGGAATAGCTGAGCTAACACAAGAGTCTCTTGCCTTGCATGAGATGGTGGCAGCGAGTGGTGGCGATCCGGGCGGACGCATTGAGAAGATGTCAATGCTATTGAAGAAGATAAAAGATTATGTTCAAACAGAAAATCTAGTGTATGATAATAATGTAGGAGGAAAGGGGCATTCTTCAAAATCCAGCAAACAAGTGACAAATGAAAGGAATCATCAGACTCCTGTTATCCCTGATGATTTTCGATGTCCTGTTTCTCTTGAATTGATGAAGGATCCTGTCATTGTTTCAACAGGACAGACTTATGACCGTTCTTCTATTGAGAAGTGGTTACAAGCAGGGCACAAAACATGCCCCAAAACACAGCAGAGCCTAACTAGTACTGTCCTCACTCCCAACTACGTCTTGCGAAGCCTCATAGAACAATGGTGCGAAGCAAATGGCATTGAACCACCAAAGCGATCAAGCAATCCCGAGCCTAGTAAATCAGTGTCGGCTTATGCCCCGGCTGAGCGAAGCAAGATTCAAACTCTTCTCCAAAGGCTCACTTCTGGAAATCCAGAAGACCAAAGAACTGCTGCAGGGGAGATCCGGCTTCTTGCGAAGCGCAATGCAGATAACCGTGTGGCCATTGCAGAAGCCGGTGCAATACCTCTCCTTGTTGGTCTCCTATCTGTGCCTGATTCCCGCACTCAAGAGAATGCTGTTACAGCACTTCTGAATCTTTCCATTTATGAAAACAACAAAGGAAGCATTGTATCTTCAGGGGCAATCCCAGGCATAGTTCATGTGCTTAAGAAGGGAAGCATGGAAGCTCGAGAAAATGCAGCAGCAACACTTTTCAGCCTATCAGTTATCGACGAAAACAAGGTTACAATTGGTGCTTCCGGAGCCATACCACCATTAGTAACACTTCTAAGTGAGGGTACTCAGAGGGGTAAGAAAGATGCTGCAACAGCACTCTTTAATCTATGCATTTATCAAGGGAACAAGGGAAAGGCGGTCAGGGCCGGCGCCGTTCCCACATTGATGCAACTTCTGACAGAACCTAATGGAAGCATGGTGGATGAAGCATTGGCCATTTTGGCAATACTGTCTAGCCATCCTGATGGAAAGGCTGCCATTGGTGCTGCAGAGGCAGTGCCATTTTTGGTAGAGTTTATTGCAAGTGGTTCACCAAGGAACAAAGAAAACGCGGCTGCTGTGTTGGTTCATCTTTCTTCCGGAGATCAACAATATCTAGCAAAGGCCCGAGAGCTCGACGTGATGGCTCCTTTGTTGGATTTGGCTCAAAATGGTACAGACAGAGGAAAAAGGAAGGCAGCTCAATTGCTAGAACGCATTAGCAGGTTCCTTGAGCAGCAGCAGCAAGAGCAAGAAGAGGAGCAGGAAGTGGAAGTTCAGACACAAAATGAACTGAATGATGCTGCACAACCACCTCTTATTACCAACATGGATGATACCTGA 2031 0.4579 MGEGEQDQDDGVVDTLIQLLKEIAAISDFRPMLKKHYCNLSRRLNLLTPLFHEIKDLKHNHAFIPNHTFKAMLHLRDALQSARDILSFGADCSKIFMVLEREQIMSKFYEVTARLEQSLAAISCDQLDISDEVKEQVELVLAQFRRAKGRVDEPDIKLYEDVLSLYNNNSDVATNPAVIRQLAEKLELMGIAELTQESLALHEMVAASGGDPGGRIEKMSMLLKKIKDYVQTENLVYDNNVGGKGHSSKSSKQVTNERNHQTPVIPDDFRCPVSLELMKDPVIVSTGQTYDRSSIEKWLQAGHKTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGIEPPKRSSNPEPSKSVSAYAPAERSKIQTLLQRLTSGNPEDQRTAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQENAVTALLNLSIYENNKGSIVSSGAIPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGAVPTLMQLLTEPNGSMVDEALAILAILSSHPDGKAAIGAAEAVPFLVEFIASGSPRNKENAAAVLVHLSSGDQQYLAKARELDVMAPLLDLAQNGTDRGKRKAAQLLERISRFLEQQQQEQEEEQEVEVQTQNELNDAAQPPLITNMDDT 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272413g00006 676 Pfam Armadillo/beta-catenin-like repeat 475 513 IPR000225 GO:0005515
Stsc272413g00006 676 Pfam Armadillo/beta-catenin-like repeat 392 431 IPR000225 GO:0005515
Stsc272413g00006 676 ProSiteProfiles U-box domain profile. 264 338 IPR003613 GO:0004842|GO:0016567
Stsc272413g00006 676 Gene3D - 457 653 IPR011989 -
Stsc272413g00006 676 SMART arm_5 598 638 IPR000225 GO:0005515
Stsc272413g00006 676 SMART arm_5 515 555 IPR000225 GO:0005515
Stsc272413g00006 676 SMART arm_5 392 432 IPR000225 GO:0005515
Stsc272413g00006 676 SMART arm_5 433 473 IPR000225 GO:0005515
Stsc272413g00006 676 SMART arm_5 474 514 IPR000225 GO:0005515
Stsc272413g00006 676 SMART arm_5 556 596 IPR000225 GO:0005515
Stsc272413g00006 676 SUPERFAMILY ARM repeat 363 646 IPR016024 -
Stsc272413g00006 676 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 338 IPR013083 -
Stsc272413g00006 676 Coils Coil 629 660 - -
Stsc272413g00006 676 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 485 527 IPR000225 GO:0005515
Stsc272413g00006 676 FunFam RING-type E3 ubiquitin transferase 9 125 - -
Stsc272413g00006 676 Pfam U-box domain 265 335 IPR003613 GO:0004842|GO:0016567
Stsc272413g00006 676 PANTHER U BOX DOMAIN-CONTAINING 32 636 - -
Stsc272413g00006 676 Pfam Neurochondrin 522 651 IPR008709 -
Stsc272413g00006 676 SUPERFAMILY RING/U-box 253 340 - -
Stsc272413g00006 676 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 403 445 IPR000225 GO:0005515
Stsc272413g00006 676 MobiDBLite consensus disorder prediction 240 266 - -
Stsc272413g00006 676 Gene3D - 341 456 IPR011989 -
Stsc272413g00006 676 Gene3D - 11 125 IPR036537 GO:0007166
Stsc272413g00006 676 CDD RING-Ubox_PUB 266 318 IPR045210 -
Stsc272413g00006 676 SMART Ubox_2 268 331 IPR003613 GO:0004842|GO:0016567
Stsc272413g00006 676 MobiDBLite consensus disorder prediction 337 358 - -
Stsc272413g00006 676 FunFam RING-type E3 ubiquitin transferase 264 338 - -
Stsc272413g00006 676 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 526 568 IPR000225 GO:0005515
Stsc272413g00006 676 MobiDBLite consensus disorder prediction 642 676 - -
Stsc272413g00006 676 MobiDBLite consensus disorder prediction 240 262 - -
Stsc272413g00006 676 FunFam RING-type E3 ubiquitin transferase 347 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272413g00006 Stsc-Chr272413 23084 26514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272413g00006 15 652 U-box Gene Family AT3G46510 67.963 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272413g00006 - - gmx:100812160 984.171