Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272410g00007 ATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCACGAATCAGGTTCACGGAACCTCAGGTCAAATGTTACATGCATCAGCTGCTATCTGGACTTGAGCATTGTCATAACCGACATGTACTTCACCGTGATATTAAAGGATCAAATCTTCTCATTGACAATGAAGGAATACTTAAGATTGCTGACTTTGGATTGGCATCGTTGTTCGATCCAAACAATAAGCATCCCATGACTAGTCGTGTAGTAACTCTTTGGTATCGGCCCCCAGAATTGCTTCTTGGTGCCACCGATTATGGTGTGGGTATAGACCTATGGAGTGCTGGCTGTATTTTAGGAGAGTTATTGGCTGGAAAGCCAATAATGCCGGGTCGTACAGAGGTGGAGCAACTGCATAAGATATACAAATTATGTGGTTCACCTTCTGATGAGTATTGGAAGAAGTCAAAGTTACCTAATGCCACCTTGTTTAAGCCCCGAGAACCATACAGGAGATGCCTGAGAGAGACATTTAAAGATTTTCCTCCTTCTGCATTACCCCTTATTGAAAGTCTTCTTGCATTTGATCCCGCCGAACGGAAAACTGCCTCAGATGCTTTGCGAAGTGAGTTCTTCACCACAGAGCCTTATGCTTGCGATCCTTCAAGTCTTCCAAAATATCCCCCAACCAAGGAAATGGATGCTAGACGGCAGGACGATGAGGCCAGAAGATTGAGGGCTGCTAGCAAAGCTCAGGCTAATGGTCCAAAGAAGCATCGCACTCGTGATCGTGCCGTGAAAGCTATTCCTGCTCCTGAAGCCAATGCTGAAATTCAATCCAATATTGATAGAAGGCGTCTAATAACTCATGCAAATGCTAAGAGCAAGAGCGAAAAGTTCCCACCGCCACATCAAGATGGACAACTTGGATTTCCATTGGGATCTTCCCATCGTATTGATCCAGATACTGTTCCTATTGATGTCTCCTTCACTTCAACAACGTCGTATATTTATTCAAAGGAACCATTCCAAGCTTGGTCAGGTCCCATTGGTAATGCTGCTGCTGAAATTGGAGTGCCAAAAAACAAGAAACACACCGCAACTGATGCATTAGATTTGTCAAAACCACATAAAGGTTCACACAGGGATAACCTTAAAGGAAAAAAAAGCATAGTTTAG 1155 0.439 MVHDLAGLAASPRIRFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDNEGILKIADFGLASLFDPNNKHPMTSRVVTLWYRPPELLLGATDYGVGIDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYRRCLRETFKDFPPSALPLIESLLAFDPAERKTASDALRSEFFTTEPYACDPSSLPKYPPTKEMDARRQDDEARRLRAASKAQANGPKKHRTRDRAVKAIPAPEANAEIQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHRIDPDTVPIDVSFTSTTSYIYSKEPFQAWSGPIGNAAAEIGVPKNKKHTATDALDLSKPHKGSHRDNLKGKKSIV 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272410g00007 384 Gene3D Transferase(Phosphotransferase) domain 1 3 244 - -
Stsc272410g00007 384 Pfam Protein kinase domain 12 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272410g00007 384 PANTHER CELL DIVISION PROTEIN KINASE 1 208 - -
Stsc272410g00007 384 MobiDBLite consensus disorder prediction 222 239 - -
Stsc272410g00007 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 40 52 IPR008271 GO:0004672|GO:0006468
Stsc272410g00007 384 FunFam probable serine/threonine-protein kinase At1g54610 3 244 - -
Stsc272410g00007 384 SUPERFAMILY Protein kinase-like (PK-like) 4 211 IPR011009 -
Stsc272410g00007 384 MobiDBLite consensus disorder prediction 354 384 - -
Stsc272410g00007 384 MobiDBLite consensus disorder prediction 212 255 - -
Stsc272410g00007 384 ProSiteProfiles Protein kinase domain profile. 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272410g00007 384 SMART serkin_6 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272410g00007 384 MobiDBLite consensus disorder prediction 353 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272410g00007 Stsc-Chr272410 32536 35136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272410g00007 1 244 Core Cell Cycle Gene Families AT5G10270 55.510 1.05e-91 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc272410g00007 Pkinase 9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272410g00007 K08819 - gmx:100786837 703.36