Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272409g00001 ATGAGGGTAGGGAAAGGGAACCAGGAAGAGGAAGAGTACGACGAAGAGGAATTCGGTTCTTCCAAGAAACAAGGCCCTTCCTCTGCCCCTAATAACGCCAATAACACCAATAAAGATTCCAAAGCTGTTGATAAGGCAAGTGTGATAAGATCAAAACATTCTGTGACTGAGCAGCGAAGAAGAAGCAAGATAAATGAGAGATTTCAGATATTGAGGGATCTCATACCTCATAGCGATCAAAAGAGAGACACAGCATCGTTCTTACTGGAGGTGATTGAGTATGTTCAGTACTTACAGGAGAAGGTACAAAAGTATGAAGGCTCGTATCAAGGTTGGGGTCATGAACCCTCCAAGTTGATGCCATGGAGAAATAGCCATTGGCGTGTGCAAAGCTTTGTTGGGCAACCTCAAGCCATAAAGAATGGTTCTGGACCAGTGTCACCTTTTCCTGGAAAGTTTGACGAAAGCAACATTAGTATCTCTCCAACTATGCTCAGTGGCAACCAGAACATGATAGATACCGACCAGGGTAGGGATATTGTCAGCAAAGCATCCGAAGGACAACCTGATTTAGCTAGCAAGGGAATAGCTTTGCCCTTGGGTATGCACACAAACATGTCTGTTCCTGTCAGAAGCGATGGTGTATCTTCCCATCCTCTACAGGGATCTGTTTCTGAAGCACAGTCAACTGAATGCCCTGCAACTAGTGAACCACCGAACCAACAGGATGAGCTGACTATTGAAGGAGGGACAATCAGCATTTCAAGTGTTTACTCCCAAGGGTTGTTGAACAATCTGACTCAGGCACTACAGAGTGCTGGTTTAGATCTATCACAGGCCAGCATCTCAGTTCAGATTAATCTTGGAAAACGAGCAAACAAAGGACCAAGCTGCGGGACATCTTCTCCCAAGAATCACGAAATGGTCCCTTCCAGCCACCAAGCTTTTGCACAGTTTAGAGATTCCGGGAGGGAAGATTCAGACCAAGCACAGAAGCGTCTGAAAACATTCAAGTGA 1017 0.4543 MRVGKGNQEEEEYDEEEFGSSKKQGPSSAPNNANNTNKDSKAVDKASVIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWGHEPSKLMPWRNSHWRVQSFVGQPQAIKNGSGPVSPFPGKFDESNISISPTMLSGNQNMIDTDQGRDIVSKASEGQPDLASKGIALPLGMHTNMSVPVRSDGVSSHPLQGSVSEAQSTECPATSEPPNQQDELTIEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANKGPSCGTSSPKNHEMVPSSHQAFAQFRDSGREDSDQAQKRLKTFK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272409g00001 338 MobiDBLite consensus disorder prediction 319 338 - -
Stsc272409g00001 338 Gene3D - 44 117 IPR036638 GO:0046983
Stsc272409g00001 338 CDD bHLH_AtBIM_like 47 123 - -
Stsc272409g00001 338 MobiDBLite consensus disorder prediction 1 61 - -
Stsc272409g00001 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 119 IPR036638 GO:0046983
Stsc272409g00001 338 MobiDBLite consensus disorder prediction 205 244 - -
Stsc272409g00001 338 FunFam BHLH domain class transcription factor 46 118 - -
Stsc272409g00001 338 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 336 IPR044295 GO:0003700|GO:0006351|GO:0046983
Stsc272409g00001 338 MobiDBLite consensus disorder prediction 292 318 - -
Stsc272409g00001 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 98 IPR011598 GO:0046983
Stsc272409g00001 338 Pfam Helix-loop-helix DNA-binding domain 50 99 IPR011598 GO:0046983
Stsc272409g00001 338 SMART finulus 54 104 IPR011598 GO:0046983
Stsc272409g00001 338 MobiDBLite consensus disorder prediction 292 338 - -
Stsc272409g00001 338 MobiDBLite consensus disorder prediction 43 61 - -
Stsc272409g00001 338 MobiDBLite consensus disorder prediction 209 244 - -
Stsc272409g00001 338 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272409g00001 Stsc-Chr272409 606 7086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272409g00001 1 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 59.672 5.64e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc272409g00001 HLH 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272409g00001 - - gmx:100816055 544.658