Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272406g00004 ATGTTGCTGATTGTGTTTGCTTTGATCCTTCTGTGTAGGAAGAAGAGTGATAACAGAACCAGCAACATTGAAAATATTGCAGCTTTGAAGCAGGGTCATGGTGGGGGAATCCATGGTGAGAAGAATCATGTTTCTGAAGTGGAGACTGTGGGTGGTGGTGAGAACAAGAAGCTGGTGTTCTTTGGGAATTCAGCAGGGAAGGAGTTTGATTTGGAGGATTTGCTTAGAGCATCTGCTGAGGTTTTAGGGAAGGGTACCTTTGGAACTTCATACAAGGCTGTGTTGGAGAATGGTCCTGTGGTGGCTGTGAAGAGGCTCAAGGATGTGGCACTGTCTGAGAGGGACTTCAGAGATGAGATTGAGGTTGCTGGAGCAATGGTTCATGAGAATTTGGTGCCTCTTAGGGCTTACTATTATAGCAGGGATGAGAAGCTTCTTGTTCATGATTACTTGCATATGGGAAGCTTGTCTGCACTCTTGCATGGGAACAAAGGATCGGGCCGAACACCACTGACTTGGGAACTGAGATCAGGGATTGCGCTGGGAGCTGCTCGCGCGATTGAGTACCTACATTCACAAGGGCCTAATGTATCTCATGGAAACATAAAGTCATCAAACATCCTCCTAACCAAGAAGTATGAAGCCAGAGTATCTGACTTTGGCCTTGCACAGCTCGTCAGCCCCTCATCGACACCTAATAGGATTGCCGGCTACCGTGCTCCTGAGGTAACCGATCCTCGCAGAGTGTCCCACAAGGCCGATGTGTACAGCTTCGGCGTGGTTCTCTTGGAGGTTCTTACCGGAAAGGCTCCAACTCACGCCTTATTGAATGAGGAAGGAGTGGACCTTCCGAGATGGGTGCAATCGGTTGTTAGGGAAGAGTGGACTTGTGAGGTCTTTGATGCCGAGCTCCTTAGGCATCAGAGTGTTGAAGAGGATATGGTTGAGTTGTTGCAACTTGGGGTGGATTGTACAGCTCCATACCCAGATAATCGACCTTCGATCGCCCAAGTGAGACACCGGATCGAAGAGCTACGTAGTTCCAAGGATCAAAAACAAACCCAGCAGCAACATGATTTGATCAGTGTTGTAGATGATGTATCTTGA 1107 0.4815 MLLIVFALILLCRKKSDNRTSNIENIAALKQGHGGGIHGEKNHVSEVETVGGGENKKLVFFGNSAGKEFDLEDLLRASAEVLGKGTFGTSYKAVLENGPVVAVKRLKDVALSERDFRDEIEVAGAMVHENLVPLRAYYYSRDEKLLVHDYLHMGSLSALLHGNKGSGRTPLTWELRSGIALGAARAIEYLHSQGPNVSHGNIKSSNILLTKKYEARVSDFGLAQLVSPSSTPNRIAGYRAPEVTDPRRVSHKADVYSFGVVLLEVLTGKAPTHALLNEEGVDLPRWVQSVVREEWTCEVFDAELLRHQSVEEDMVELLQLGVDCTAPYPDNRPSIAQVRHRIEELRSSKDQKQTQQQHDLISVVDDVS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272406g00004 368 FunFam Probable inactive receptor kinase At1g48480 151 353 - -
Stsc272406g00004 368 Coils Coil 335 355 - -
Stsc272406g00004 368 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272406g00004 368 Gene3D Phosphorylase Kinase; domain 1 40 150 - -
Stsc272406g00004 368 PANTHER OS05G0588300 PROTEIN 3 351 - -
Stsc272406g00004 368 Pfam Protein kinase domain 79 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc272406g00004 368 SUPERFAMILY Protein kinase-like (PK-like) 80 347 IPR011009 -
Stsc272406g00004 368 FunFam pollen receptor-like kinase 1 44 150 - -
Stsc272406g00004 368 Gene3D Transferase(Phosphotransferase) domain 1 151 367 - -
Stsc272406g00004 368 CDD STKc_IRAK 82 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272406g00004 Stsc-Chr272406 9476 12401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272406g00004 3 348 Receptor kinase-like Gene Family AT3G17840 65.027 8.37e-156 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc272406g00004 Pkinase 3.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272406g00004 - - gmx:100781597 520.005