Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272404g00001 ATGGCAGGTAGTGGACAACTAACAGTTCCACCGGGATTTAGGTTCCACCCAACTGATGAGGAGCTTCTCTACTATTATCTAAGGAAGAAAGTCTCTTATGAAGCCATTGACCTTGATGTTATCAGAGAAGTTGATCTCAACAAACTTGAACCTTGGGACCTCAAAGATAAATGCAGGATAGGATCAGGACCTCAGAATGAGTGGTATTTTTTCAGTCATAAAGATAAAAAGTACCCAACAGGAACAAGGACAAATAGGGCAACTACTGCTGGGTTCTGGAAAGCCACTGGAAGGGACAAGGCCATATATCATTCTAGCAATTCCAAGAGAATTGGGATGAGGAAGACGTTAGTCTTTTACACTGGTCGCGCGCCGCATGGTCAAAAGACAGATTGGATCATGCATGAATATCGCCTTGACGAAGACGACGCCGAGGTTCAGGAGGATGGGTGGGTGGTGTGCAGGGTTTTCAAAAAGAAAAACCAAGTGAGAGGCGTCCATCAAGAAATTGAAGAAGAGGAACATCATTTAGCCGCACATCAACACATGAGAGGATTAACAACCCAACAAGTTCTGGACCCAAAACACCACCACCACATGCAAAATCATCAAGGACTTTATGATAATAATAATTACAGTAACAACTTTGATGGCTCCATGCACCTTCCACAGTTGTTCAGTCCAGAATCTTCTGCGGCTGCTGCGGCCGCGGCGGCACACTCTACTCCCATGAATGCCATGGACATTCTTGAATGCTCTCATAACCTTTTAAGGCTCACAACAACAAATGGGTGTGGACTCAATCTCATGCAACAACAAGGAGGAGAGAGGTTCAATGGTGATTGGTCTTTTCTTGATAAGCTTCTTGCTTCACACCATGGCACCACCATGGAAAATCATCATCATCATAATAACAAATGTAGTAATGATAATAATAGTAATAATCTTCATCATCAGCATACTGGAATTGCTATCGGCACTACTACATCTCAGAAATTCCCATTTCACTATCTTGGTTGCGACAACCATGATATCATGAAATTTTCCAAGTAG 1053 0.4283 MAGSGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHSSNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDEDDAEVQEDGWVVCRVFKKKNQVRGVHQEIEEEEHHLAAHQHMRGLTTQQVLDPKHHHHMQNHQGLYDNNNYSNNFDGSMHLPQLFSPESSAAAAAAAAHSTPMNAMDILECSHNLLRLTTTNGCGLNLMQQQGGERFNGDWSFLDKLLASHHGTTMENHHHHNNKCSNDNNSNNLHHQHTGIAIGTTTSQKFPFHYLGCDNHDIMKFSK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272404g00001 350 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
Stsc272404g00001 350 FunFam NAC domain-containing protein 18 163 - -
Stsc272404g00001 350 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
Stsc272404g00001 350 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
Stsc272404g00001 350 MobiDBLite consensus disorder prediction 295 315 - -
Stsc272404g00001 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 250 - -
Stsc272404g00001 350 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272404g00001 Stsc-Chr272404 8201 10485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272404g00001 1 350 NAC Transcription Factor Family AT1G79580 57.592 3.39e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc272404g00001 NAM 1.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272404g00001 - - gmx:100789606 491.5