Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc272392g00001 ATGTCGAGCAGAAGATCTTCGTCGCGTTCGAGGCAATCATCGGGTGCTCCAACTTCCGCCGGGATGACGGATGCTCAAATTACCGATCTCGTCTCCAAGTTGCAACAACTCATCCCTCAGCTACGCTCTAGGCATTCCGACAAGGTTTCTGCTGCGAAGGTGTTACAAGAGACTTGTAGCTACATAAAAAGCTTGCATAGAGAGGTTGATGATCTGAGTGACCGATTGTCGGAGCTTTTGGCCAACACAGACTCAAATAGCGCTCAAGCAGCCATTATTAGGAGCTTACTCATGTAA 297 0.4848 MSSRRSSSRSRQSSGAPTSAGMTDAQITDLVSKLQQLIPQLRSRHSDKVSAAKVLQETCSYIKSLHREVDDLSDRLSELLANTDSNSAQAAIIRSLLM 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc272392g00001 98 CDD bHLH_AtPRE_like 23 82 - -
Stsc272392g00001 98 Pfam Helix-loop-helix DNA-binding domain 26 66 IPR011598 GO:0046983
Stsc272392g00001 98 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 65 IPR011598 GO:0046983
Stsc272392g00001 98 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 87 IPR036638 GO:0046983
Stsc272392g00001 98 PANTHER TRANSCRIPTION FACTOR PRE 1 98 IPR044293 GO:0006355|GO:0040008|GO:0046983
Stsc272392g00001 98 Gene3D - 25 94 IPR036638 GO:0046983
Stsc272392g00001 98 FunFam Transcription factor ILI6 9 94 - -
Stsc272392g00001 98 Coils Coil 62 82 - -
Stsc272392g00001 98 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc272392g00001 Stsc-Chr272392 2343 3283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc272392g00001 22 97 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 71.429 3.15e-32 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc272392g00001 HLH 8.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc272392g00001 - - gmx:100804830 143.28